PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG037162t1

Common Name

TCM_037162

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

CPP

Protein Properties

Length: 644aa MW: 70175.6 Da PI: 8

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG037162t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.4	1.6e-14	156	195	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfaag +C+ C+C +C+N+ e+ Thecc1EG037162t1 156 KQKQCNCKNSRCLKLYCECFAAGIYCNG-CNCINCHNNVEN 195 89************************.******9875 PP
2	TCR	49.3	9.6e-16	240	279	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeC++a+ Cse+CkC dCkN e Thecc1EG037162t1 240 KHNKGCHCKKSGCLKKYCECYQANILCSENCKCMDCKNFE 279 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.9E-17	155	195	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.804	156	280	IPR005172	CRC domain
Pfam	PF03638	9.0E-12	157	192	IPR005172	CRC domain
SMART	SM01114	1.5E-19	240	281	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.3E-12	243	278	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MEQGETVSDF APKKLARQLD FTTMCRASAN ATLPDHPMHL QSQSQPQPQW PSQTPLQTKH 60 QQQPQPQELQ LRLYFQPQTV QSPPQPQLKP QSPPMPQVQT RPPPPPPPQQ QQVAVVHRVP 120 HPVQKLSLPT FQLSKQESPR SGPRGHVDGK DGTPKKQKQC NCKNSRCLKL YCECFAAGIY 180 CNGCNCINCH NNVENEAARQ EAVGATLERN PNAFRPKIAS SPHRPQDARD DARDVQMVGK 240 HNKGCHCKKS GCLKKYCECY QANILCSENC KCMDCKNFEG SEERRALFHG DHNSMAYMQQ 300 AANAAISGAI GSSGYGTPLA SKKRKSEEFL FGVAVNDQFN QKIVQHQQEN HLKNPVATSF 360 PFSAPVSRAA NTASLGSSKL TYRSPLADIL QPQDVKELCS VLVLVSSEAE RALAAEKSSK 420 MDSQTEKGSI ETIVSSGQAG EMCQQGNGVH RGATNDRTSE NQADADRSGN SGADGDDVQN 480 GRPLSPGTRA LMCDEEDAMF MAAGSSNVLA DHSQNMTQKS SNGHECTDVY AEQERLVLTR 540 FRDFLNQLIT CGSIKETMCS PLAISEKRSQ QQPVENGAVK SGNQGGGQKE PYRNGIVKSS 600 IPAPVEIGQT VSAACSALHT DLPSKHRLPI GNGDTNVEIK GWN*

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MEQGETVSDF APKKLARQLD FTTMCRASAN ATLPDHPMHL QSQSQPQPQW PSQTPLQTKH  60
QQQPQPQELQ LRLYFQPQTV QSPPQPQLKP QSPPMPQVQT RPPPPPPPQQ QQVAVVHRVP  120
HPVQKLSLPT FQLSKQESPR SGPRGHVDGK DGTPKKQKQC NCKNSRCLKL YCECFAAGIY  180
CNGCNCINCH NNVENEAARQ EAVGATLERN PNAFRPKIAS SPHRPQDARD DARDVQMVGK  240
HNKGCHCKKS GCLKKYCECY QANILCSENC KCMDCKNFEG SEERRALFHG DHNSMAYMQQ  300
AANAAISGAI GSSGYGTPLA SKKRKSEEFL FGVAVNDQFN QKIVQHQQEN HLKNPVATSF  360
PFSAPVSRAA NTASLGSSKL TYRSPLADIL QPQDVKELCS VLVLVSSEAE RALAAEKSSK  420
MDSQTEKGSI ETIVSSGQAG EMCQQGNGVH RGATNDRTSE NQADADRSGN SGADGDDVQN  480
GRPLSPGTRA LMCDEEDAMF MAAGSSNVLA DHSQNMTQKS SNGHECTDVY AEQERLVLTR  540
FRDFLNQLIT CGSIKETMCS PLAISEKRSQ QQPVENGAVK SGNQGGGQKE PYRNGIVKSS  600
IPAPVEIGQT VSAACSALHT DLPSKHRLPI GNGDTNVEIK GWN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	9e-34	151	289	5	132	Protein lin-54 homolog
5fd3_B	9e-34	151	289	5	132	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX622521	7e-55	JX622521.1 Gossypium hirsutum clone NBRI_GE69283 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007012085.2	0.0	PREDICTED: protein tesmin/TSO1-like CXC 5
Refseq	XP_017983870.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 5
Swissprot	Q9SZD1	1e-155	TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBL	A0A061GJZ2	0.0	A0A061GJZ2_THECC; Transcription factor, putative isoform 1
STRING	EOY29703	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1783	28	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-135	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Thecc1EG037162t1
Entrez Gene	18587947

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]