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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG036224t1 | ||||||||
Common Name | TCM_036224 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 22304.2 Da PI: 6.5094 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.1 | 8.1e-17 | 63 | 112 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr+++ +g+Wv+eIr+p g + r +lg++ t+e+Aa a++ a +l+ Thecc1EG036224t1 63 KYKGVRRRR-WGKWVSEIRVP---G-TqERLWLGSYSTPEGAAIAHDIAHYCLRR 112 8*****777.**********8...3.35*********************999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.8E-24 | 62 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.074 | 63 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-16 | 63 | 122 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-24 | 63 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-9 | 63 | 111 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.52E-25 | 63 | 122 | No hit | No description |
PRINTS | PR00367 | 3.9E-8 | 64 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-8 | 86 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MVKSYPFSLP LTFCFFNLYS LYFPSPVFNR GSTFCSIASS LSCVSCALEK TMSAAAVEES 60 SRKYKGVRRR RWGKWVSEIR VPGTQERLWL GSYSTPEGAA IAHDIAHYCL RRPSSLNGLN 120 FPSMVPPNLN VNMSPKSVQK AASDAGMAVD AQMIVISNET KASENSGVIV GMETESWEND 180 SSGSWEGSVG KEGEALSISV EDYL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021288332.1 | 1e-136 | ethylene-responsive transcription factor ERF020, partial | ||||
Swissprot | Q9C9I8 | 5e-46 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | A0A061FRA9 | 1e-148 | A0A061FRA9_THECC; Integrase-type DNA-binding superfamily protein, putative | ||||
STRING | EOY17069 | 1e-149 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3865 | 28 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 2e-48 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG036224t1 |
Entrez Gene | 18592860 |
Publications ? help Back to Top | |||
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