PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG035671t1
Common NameTCM_035671
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 440aa    MW: 47287.7 Da    PI: 6.804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG035671t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16e-20217266255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++ a+++++g
  Thecc1EG035671t1 217 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDDAALRFRG 266
                       7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-13217266IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22217275IPR016177DNA-binding domain
SMARTSM003805.3E-37217280IPR001471AP2/ERF domain
PROSITE profilePS5103225.699217274IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-32217275IPR001471AP2/ERF domain
PRINTSPR003671.2E-11218229IPR001471AP2/ERF domain
CDDcd000183.30E-15225276No hitNo description
PRINTSPR003671.2E-11240256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MCLLNKVAHH RGSGQYVRFP PVGDGGEEQQ EDSNTQEIQS QLSQIRESNQ PMIQHRNNTE  60
MFFGPQGQAT EMSAMVSALT HVVSGQRAAA DWGYGANLAG MVTSSFGHSG SAASPSSYSS  120
SASPSGSGSA SGSGLWIGQK RGREEEGATQ LIESVTRVQR PFGDFRGSHA DSSSGATTVT  180
EETTNVVAPP TTTAPSTTST ETAAAAAYEE TGERRRRYRG VRQRPWGKWA AEIRDPHKAA  240
RVWLGTFDTA EAAARAYDDA ALRFRGNRAK LNFPENVRLV PQPMQNFPAT QTSVSSSLTT  300
HFPPSHSTPM PSYYQSQPLQ SSNVDMLRDY WQYSQLLQSS TDFHGQQTTS LLEQMIQSTQ  360
LANIQQPILS SSLSSLPSSF AVSSASGSSS SSSASFPLLF AEQQQMGNLR QQFNQTQASG  420
SDFPVPPSSH PGHYPSSTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-23216277163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212217ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007019566.20.0PREDICTED: ethylene-responsive transcription factor ABR1
TrEMBLA0A061FIA20.0A0A061FIA2_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGEOY167910.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15224819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.13e-21ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]