 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thecc1EG035565t2 |
| Common Name | TCM_035565 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
| Family |
Trihelix |
| Protein Properties |
Length: 560aa MW: 61018.5 Da PI: 4.8181 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thecc1EG035565t2 | genome | CGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 94.9 | 7.5e-30 | 86 | 170 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g+ ++++++ +++fdqlea
Thecc1EG035565t2 86 RWPRQETLALLKIRSDMDVTFRDASVKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRTGKSDGK--AYRFFDQLEA 170
8********************************************************************975555..5*******85 PP
|
| 2 | trihelix | 25.5 | 3.4e-08 | 444 | 479 | 1 | 36 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36
rW+k ev aLi++r++++ +++++ k+plWee+s
Thecc1EG035565t2 444 RWPKVEVEALIKLRTSLDAKYQENGPKGPLWEEISV 479
8*********************************96 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010192 | Biological Process | mucilage biosynthetic process |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 560 aa
Download sequence Send
to blast |
MLGCGDTSVS VLGSSSGGGG GDVAAAAAVA TTVSSSGALD GRSEAAANML GSNGNNNNNN 60
NNTNNNSGDD DRGRVDEGDR SFGGNRWPRQ ETLALLKIRS DMDVTFRDAS VKGPLWEEVS 120
RKLAELGYHR SAKKCKEKFE NVYKYHKRTK DGRTGKSDGK AYRFFDQLEA LENISSIQSP 180
AAPPPPSPQL KPQHQTVMPA ANPPSLSHIT IPSTTLASLP QNIVPPNASF TVPSFPSTNP 240
TIQPPPPTTN PTIPSFPNIS ADLMSNSTSS STSSDLELEG RRKRKRKWKD FFERLMKEVI 300
QKQEDMQKKF LEAIEKREHE RLVREDAWRM QEMARINRER EILAQERSIA AAKDAAVMAF 360
LQKLSEQRNP GQAQNNPLPS QQPQPPPQAP PQPVPAVATA APPAATAAPV PAPAPPLLPL 420
PMVNLDVSKT DNGDQSYTPS SSSRWPKVEV EALIKLRTSL DAKYQENGPK GPLWEEISVD 480
NSSNELKPEN SVPLLVRPEQ QWPPPPSEPD DHQHDHATED MESEQNQDED EKDGDDEEED 540
EGGDYEIVAS KPVSMGTGE*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 280 | 285 | RRKRKR |
| 2 | 280 | 286 | RRKRKRK |
| 3 | 281 | 286 | RKRKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JQ013092 | 2e-94 | JQ013092.1 Gossypium hirsutum trihelix transcription factor (GT7) mRNA, complete cds. |
