PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG035565t2

Common Name

TCM_035565

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 560aa MW: 61018.5 Da PI: 4.8181

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG035565t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.9	7.5e-30	86	170	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g+ ++++++ +++fdqlea Thecc1EG035565t2 86 RWPRQETLALLKIRSDMDVTFRDASVKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRTGKSDGK--AYRFFDQLEA 170 8******************************************************************975555..5*****85 PP
2	trihelix	25.5	3.4e-08	444	479	1	36
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36 rW+k ev aLi++r++++ +++++ k+plWee+s Thecc1EG035565t2 444 RWPKVEVEALIKLRTSLDAKYQENGPKGPLWEEISV 479 8*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	4.7E-4	83	145	IPR001005	SANT/Myb domain
CDD	cd12203	3.30E-25	85	150	No hit	No description
Pfam	PF13837	1.9E-19	85	171	No hit	No description
PROSITE profile	PS50090	6.911	85	143	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010192	Biological Process	mucilage biosynthetic process
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence Send to blast
MLGCGDTSVS VLGSSSGGGG GDVAAAAAVA TTVSSSGALD GRSEAAANML GSNGNNNNNN 60 NNTNNNSGDD DRGRVDEGDR SFGGNRWPRQ ETLALLKIRS DMDVTFRDAS VKGPLWEEVS 120 RKLAELGYHR SAKKCKEKFE NVYKYHKRTK DGRTGKSDGK AYRFFDQLEA LENISSIQSP 180 AAPPPPSPQL KPQHQTVMPA ANPPSLSHIT IPSTTLASLP QNIVPPNASF TVPSFPSTNP 240 TIQPPPPTTN PTIPSFPNIS ADLMSNSTSS STSSDLELEG RRKRKRKWKD FFERLMKEVI 300 QKQEDMQKKF LEAIEKREHE RLVREDAWRM QEMARINRER EILAQERSIA AAKDAAVMAF 360 LQKLSEQRNP GQAQNNPLPS QQPQPPPQAP PQPVPAVATA APPAATAAPV PAPAPPLLPL 420 PMVNLDVSKT DNGDQSYTPS SSSRWPKVEV EALIKLRTSL DAKYQENGPK GPLWEEISVD 480 NSSNELKPEN SVPLLVRPEQ QWPPPPSEPD DHQHDHATED MESEQNQDED EKDGDDEEED 540 EGGDYEIVAS KPVSMGTGE*

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence Send to blast

MLGCGDTSVS VLGSSSGGGG GDVAAAAAVA TTVSSSGALD GRSEAAANML GSNGNNNNNN  60
NNTNNNSGDD DRGRVDEGDR SFGGNRWPRQ ETLALLKIRS DMDVTFRDAS VKGPLWEEVS  120
RKLAELGYHR SAKKCKEKFE NVYKYHKRTK DGRTGKSDGK AYRFFDQLEA LENISSIQSP  180
AAPPPPSPQL KPQHQTVMPA ANPPSLSHIT IPSTTLASLP QNIVPPNASF TVPSFPSTNP  240
TIQPPPPTTN PTIPSFPNIS ADLMSNSTSS STSSDLELEG RRKRKRKWKD FFERLMKEVI  300
QKQEDMQKKF LEAIEKREHE RLVREDAWRM QEMARINRER EILAQERSIA AAKDAAVMAF  360
LQKLSEQRNP GQAQNNPLPS QQPQPPPQAP PQPVPAVATA APPAATAAPV PAPAPPLLPL  420
PMVNLDVSKT DNGDQSYTPS SSSRWPKVEV EALIKLRTSL DAKYQENGPK GPLWEEISVD  480
NSSNELKPEN SVPLLVRPEQ QWPPPPSEPD DHQHDHATED MESEQNQDED EKDGDDEEED  540
EGGDYEIVAS KPVSMGTGE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	280	285	RRKRKR
2	280	286	RRKRKRK
3	281	286	RKRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00243	DAP	Transfer from AT1G76880	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ013092	2e-94	JQ013092.1 Gossypium hirsutum trihelix transcription factor (GT7) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017981065.1	0.0	PREDICTED: trihelix transcription factor GT-2
Swissprot	Q39117	1e-106	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A061FIK2	0.0	A0A061FIK2_THECC; Duplicated homeodomain-like superfamily protein isoform 2
STRING	EOY16707	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-93	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG035565t2
Entrez Gene	18592605

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]