PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 555aa MW: 61908.1 Da PI: 4.8561

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG035362t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	455.6	3.1e-139	186	554	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 + L+ecA ++s+g+ ++a+a+++ l++++s +gdp qR+aay++e+Laar+a+s++ lykal+++e + ss++laa+++++ev+P++kf++ Thecc1EG035362t2 186 QMLIECAAVLSEGNIKEASAIINDLRQMVSIQGDPPQRIAAYMVEGLAARMAESGKYLYKALRCKEPP---SSDRLAAMQILFEVCPCFKFGF 275 79***************************************************************9...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++aN aI ea++ e+rvHiiDfdi+qG Q+++L+q++a+Rp++pp+lR+Tgv++pes+ + l +g rL+k+Ae+lgvpfef++ va+r+ Thecc1EG035362t2 276 MAANGAIIEAFKDEKRVHIIDFDINQGSQYITLIQTIAKRPGKPPHLRLTGVDDPESVqrLNGGLAIVGLRLEKLAEALGVPFEFQA-VASRT 367 ****************************************************99777889*******************.7 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 + +++++L+++pgEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yysa+f+sl+a+lpres Thecc1EG035362t2 368 SLVTPSMLDCRPGEALIVNFAFQLHHMPDESVSTINQRDQLLRMVKSLNPKLVTVVEQDVNTNTSPFFPRFVEAYSYYSAVFESLDATLPRES 460 ***************************************************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 ++r++vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ p+s ++ + ++ l+r++ ++ y+++e+ g l +gW+d++L+++Sa Thecc1EG035362t2 461 QDRMNVERQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFSSCPMSPNVIDMIRKLIREYCDR-YKLKEDLGVLHFGWEDKSLIVASA 552 **************************************************************66.********************** PP GRAS 373 Wr 374 Wr Thecc1EG035362t2 553 WR 554 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.392	158	535	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-136	186	554	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MSLVRSAEPA TAAYGNTKLY SLRGSDSSGL SAQIFGSDKH RPVYITDSYS NESYEKYFLD 60 SPTEELIHPS SSGISGSSIR PKDVSSYQLR DYLEIQSPET LDSDTDKMKL KLQELERALL 120 ADNDVDEDDD MFGTGISMEI DGEWSDPIRT ESLHDSPKES SSSDSNLSST SSNKDVSHVS 180 SRSPKQMLIE CAAVLSEGNI KEASAIINDL RQMVSIQGDP PQRIAAYMVE GLAARMAESG 240 KYLYKALRCK EPPSSDRLAA MQILFEVCPC FKFGFMAANG AIIEAFKDEK RVHIIDFDIN 300 QGSQYITLIQ TIAKRPGKPP HLRLTGVDDP ESVQRLNGGL AIVGLRLEKL AEALGVPFEF 360 QAVASRTSLV TPSMLDCRPG EALIVNFAFQ LHHMPDESVS TINQRDQLLR MVKSLNPKLV 420 TVVEQDVNTN TSPFFPRFVE AYSYYSAVFE SLDATLPRES QDRMNVERQC LARDIVNIVA 480 CEGEERIERY EVAGKWRARM MMAGFSSCPM SPNVIDMIRK LIREYCDRYK LKEDLGVLHF 540 GWEDKSLIVA SAWR*

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MSLVRSAEPA TAAYGNTKLY SLRGSDSSGL SAQIFGSDKH RPVYITDSYS NESYEKYFLD  60
SPTEELIHPS SSGISGSSIR PKDVSSYQLR DYLEIQSPET LDSDTDKMKL KLQELERALL  120
ADNDVDEDDD MFGTGISMEI DGEWSDPIRT ESLHDSPKES SSSDSNLSST SSNKDVSHVS  180
SRSPKQMLIE CAAVLSEGNI KEASAIINDL RQMVSIQGDP PQRIAAYMVE GLAARMAESG  240
KYLYKALRCK EPPSSDRLAA MQILFEVCPC FKFGFMAANG AIIEAFKDEK RVHIIDFDIN  300
QGSQYITLIQ TIAKRPGKPP HLRLTGVDDP ESVQRLNGGL AIVGLRLEKL AEALGVPFEF  360
QAVASRTSLV TPSMLDCRPG EALIVNFAFQ LHHMPDESVS TINQRDQLLR MVKSLNPKLV  420
TVVEQDVNTN TSPFFPRFVE AYSYYSAVFE SLDATLPRES QDRMNVERQC LARDIVNIVA  480
CEGEERIERY EVAGKWRARM MMAGFSSCPM SPNVIDMIRK LIREYCDRYK LKEDLGVLHF  540
GWEDKSLIVA SAWR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-68	190	553	25	378	Protein SCARECROW
5b3h_A	2e-68	190	553	24	377	Protein SCARECROW
5b3h_D	2e-68	190	553	24	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007019339.2	0.0	PREDICTED: scarecrow-like protein 1
Swissprot	Q9SDQ3	0.0	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A061FGU2	0.0	A0A061FGU2_THECC; SCARECROW-like 1 isoform 2
TrEMBL	A0A061FPV5	0.0	A0A061FPV5_THECC; SCARECROW-like 1 isoform 1
STRING	EOY16564	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	0.0	SCARECROW-like 1

Link Out ? help Back to Top
Phytozome	Thecc1EG035362t2
Entrez Gene	18592497

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]