PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB

Protein Properties

Length: 334aa MW: 37626.9 Da PI: 9.6622

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG035359t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.4e-18	17	62	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G +W++Ia++++ gR++k+c++rw++ Thecc1EG035359t1 17 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 62 899***************************.*********996 PP
2	Myb_DNA-binding	60.3	4.2e-19	69	112	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ Thecc1EG035359t1 69 RRPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 112 679*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.581	12	63	IPR017930	Myb domain
SuperFamily	SSF46689	1.16E-29	16	110	IPR009057	Homeodomain-like
SMART	SM00717	8.4E-15	16	65	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-27	18	70	IPR009057	Homeodomain-like
CDD	cd00167	6.86E-14	20	61	No hit	No description
Pfam	PF13921	2.5E-17	20	80	No hit	No description
PROSITE profile	PS51294	28.366	64	118	IPR017930	Myb domain
SMART	SM00717	2.4E-16	68	116	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-21	71	117	IPR009057	Homeodomain-like
CDD	cd00167	1.18E-7	71	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MEDSGAASSD DVKTCPRGHW RPAEDEKLRQ LVEQYGAQNW NSIAEKLQGR SGKSCRLRWF 60 NQLDPRINRR PFTEEEEERL LAAHRIHGNK WALIARLFPG RTDNAVKNHW HVIMARKQRE 120 QSKLCGKRSF QDGLSDSKLS STGFTPRKAR CQEAFSSRIG FGDSRFLEFQ NPSKERIFSV 180 SYSSTSSPSW TFASSTMMPS NNSSSAELSR RDGKDYLSGS GSSYYSMENS KILDQSLYKY 240 HSNASAYCSS LKNSSAFGLP NYRRVVPSPF GYLKLGDNYE SNNGVMRKEL MSVIDNAPKL 300 ANIRVSSQQE NDDDSIKQKD TPFIDFLGVG ISS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-32	17	117	7	107	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527082	1e-116	HQ527082.1 Gossypium herbaceum clone NBRI_B_1735 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007019337.1	0.0	PREDICTED: transcription repressor MYB4
TrEMBL	A0A061FIQ0	0.0	A0A061FIQ0_THECC; Myb domain protein 52
STRING	EOY16562	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16592	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	4e-64	myb domain protein 52

Link Out ? help Back to Top
Phytozome	Thecc1EG035359t1
Entrez Gene	18592495

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]