PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HD-ZIP

Protein Properties

Length: 280aa MW: 32103.8 Da PI: 5.3334

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034849t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	57	110	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k Thecc1EG034849t1 57 KKRRLSIDQVKALEKNFEVENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 110 5568999**********************************************9 PP
2	HD-ZIP_I/II	128.7	2.5e-41	56	148	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy+ Lk++ydalk + ++Leke+e+L+ +lke Thecc1EG034849t1 56 EKKRRLSIDQVKALEKNFEVENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKQLEKDYAILKARYDALKLDYSNLEKEKEALTVKLKE 148 69**************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.64E-19	40	114	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.734	52	112	IPR001356	Homeobox domain
SMART	SM00389	1.1E-17	55	116	IPR001356	Homeobox domain
Pfam	PF00046	7.4E-16	57	110	IPR001356	Homeobox domain
CDD	cd00086	2.47E-15	57	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-19	59	118	IPR009057	Homeodomain-like
PRINTS	PR00031	7.6E-6	83	92	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.6E-6	92	108	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.3E-13	112	153	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MKRLSSSGSL DALISICPPK EEKNSKNKQV YSREFQAMLD SLDEDDNLEE AGQATEKKRR 60 LSIDQVKALE KNFEVENKLE PERKVKLAEE LGLQPRQVAI WFQNRRARWK TKQLEKDYAI 120 LKARYDALKL DYSNLEKEKE ALTVKLKELK AKLKEENSES SHSVKEDSPN FSQQAKDHDL 180 CDNNDDSNRI VKEESNVNAQ LLISPASSSS FQFNGSSSSS DSSNHQSRFQ PFDSRVILGN 240 MYHPQLVKVE EQCMFTAEEF CNFFSVDQAP TLQWYFTGQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	112	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017981874.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6
TrEMBL	A0A061FGS5	0.0	A0A061FGS5_THECC; Homeobox protein 6, putative
STRING	EOY15927	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM545	28	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	6e-50	homeobox protein 6

Link Out ? help Back to Top
Phytozome	Thecc1EG034849t1
Entrez Gene	18592108

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]