PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 381aa MW: 41576.2 Da PI: 4.6606

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034717t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.7	2.7e-10	306	346	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Thecc1EG034717t1 306 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 346 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.28E-14	296	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.926	296	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-12	301	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-11	302	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.28E-12	305	350	No hit	No description
Pfam	PF00010	1.5E-7	306	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MESLAAFPDG EWDSFNRMFS TEELDFTQQI LHQFSFPMEH DEGLSFINSS TFCPIPEGTM 60 SIAGVTESLS YSSNAIDSTF HYNSQESSQS SNSSGSVFVS PPNLETYCLS GSNHVAVTND 120 ITMSLDMSMD IGGVGDKITG SFPPVFPNLA REDTVNVIED LSTDSLGKLL DASHPSANTV 180 LANELLLKRK FDVLELHAEG DKMIINSNSS ENAKRRPRVS KDASKVYKNV QSKKNRKISL 240 NGNEGESNIG SDGQSSSTCS SEDDIVSQDT NGVATSDSKA SPALNLNGKT RASRGSATDP 300 QSLYARKRRE RINERLRILQ NLVPNGTKVD ISTMLEEAVH YVKFLQLQIK LLSSDDLWMY 360 APIAYNGIDI GLNEKISTLL *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MESLAAFPDG EWDSFNRMFS TEELDFTQQI LHQFSFPMEH DEGLSFINSS TFCPIPEGTM  60
SIAGVTESLS YSSNAIDSTF HYNSQESSQS SNSSGSVFVS PPNLETYCLS GSNHVAVTND  120
ITMSLDMSMD IGGVGDKITG SFPPVFPNLA REDTVNVIED LSTDSLGKLL DASHPSANTV  180
LANELLLKRK FDVLELHAEG DKMIINSNSS ENAKRRPRVS KDASKVYKNV QSKKNRKISL  240
NGNEGESNIG SDGQSSSTCS SEDDIVSQDT NGVATSDSKA SPALNLNGKT RASRGSATDP  300
QSLYARKRRE RINERLRILQ NLVPNGTKVD ISTMLEEAVH YVKFLQLQIK LLSSDDLWMY  360
APIAYNGIDI GLNEKISTLL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007018521.1	0.0	PREDICTED: transcription factor bHLH85
TrEMBL	A0A061FFD1	0.0	A0A061FFD1_THECC; Root hair defective 6-like 2, putative
STRING	EOY15746	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2834	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	1e-45	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG034717t1
Entrez Gene	18591992

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]