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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thecc1EG034627t1 |
| Common Name | TCM_034627 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
| Family |
TALE |
| Protein Properties |
Length: 370aa MW: 42200 Da PI: 6.3296 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thecc1EG034627t1 | genome | CGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 28.6 | 2.4e-09 | 296 | 331 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55
+k +yps++e+ LA+++gL+++q+ +WF N+R ++
Thecc1EG034627t1 296 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 331
4679*****************************885 PP
|
| 2 | ELK | 37.9 | 3.8e-13 | 251 | 272 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK++LlrKYsgyL+sLkqE+s
Thecc1EG034627t1 251 ELKNHLLRKYSGYLSSLKQELS 272
9*******************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0001708 | Biological Process | cell fate specification |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010051 | Biological Process | xylem and phloem pattern formation |
| GO:0010089 | Biological Process | xylem development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MDEYNQLNEN STPRGNFLYA SPVLAPNSSP YGRASSGSNV SNQQAQMPLT SFHLQSSECY 60
QSEAHPIVKT EASTSQHGQK FHYPLLRGHQ AIHHQQEGNE SSSTEVEAIK AKIIAHPQYS 120
NLLEAYMDCQ KVGAPPEVAA RLAAARQEFE ARQRSSVTSR DNSKDPELDQ FMEAYYDMLV 180
KYREELTRPI QEALDFMRRI EAQLNMLSNG PVRIFNSDEK CEGVGSSEED QDNSGGETEL 240
PEIDPRAEDR ELKNHLLRKY SGYLSSLKQE LSKKKKKGKL PKEARQKLLS WWELHYKWPY 300
PSETEKVALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF MVMDGLHPQN AALYMDGHYM 360
GDGPYRLGP*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
