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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Thecc1EG034549t1 |
Common Name | TCM_034549 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family |
MIKC_MADS |
Protein Properties |
Length: 185aa MW: 21512.8 Da PI: 10.2364 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Thecc1EG034549t1 | genome | CGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 85.5 | 3e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgkly+++s
Thecc1EG034549t1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFAS 59
8***********************************************86 PP
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2 | K-box | 89.1 | 8.5e-30 | 77 | 170 | 5 | 98 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
++ + +++ + +q+e+a L+++++nLq+++R+++Ge+L+ Ls+k+Lq+Le+qLe sl+ +R kK+++l+++i+el +k + +++en +L kk
Thecc1EG034549t1 77 QQLGNPTSEVKFWQREAAILRQQLQNLQENHRQMMGEELSGLSVKDLQNLESQLEMSLRGVRMKKDQILMDEIQELNRKGNLIHQENVELYKK 169
3444778999*********************************************************************************99 PP
K-box 98 l 98
+
Thecc1EG034549t1 170 V 170
7 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.4E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.511 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.60E-44 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.88E-32 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.0E-28 | 83 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.196 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010440 | Biological Process | stomatal lineage progression |
GO:0048574 | Biological Process | long-day photoperiodism, flowering |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0008134 | Molecular Function | transcription factor binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 185 aa
Download sequence Send
to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGKLYDFAST 60 SMRSVIERYN KTKEEHQQLG NPTSEVKFWQ REAAILRQQL QNLQENHRQM MGEELSGLSV 120 KDLQNLESQL EMSLRGVRMK KDQILMDEIQ ELNRKGNLIH QENVELYKKV NLIRQENMEL 180 YKKV*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC155659 | 0.0 | KC155659.1 Gossypium hirsutum MADS box protein MADS64 mRNA, complete cds. |