PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GATA

Protein Properties

Length: 253aa MW: 27552.8 Da PI: 6.3644

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034531t7	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	48.3	1.4e-15	210	243	1	32
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ Thecc1EG034531t7 210 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWAN 243 *****99*********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	12.942	70	105	IPR010399	Tify domain
SMART	SM00979	4.2E-7	70	105	IPR010399	Tify domain
Pfam	PF06200	2.2E-10	73	104	IPR010399	Tify domain
PROSITE profile	PS51017	12.65	138	180	IPR010402	CCT domain
Pfam	PF06203	6.0E-15	138	179	IPR010402	CCT domain
SMART	SM00401	2.6E-5	204	251	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.09E-9	205	244	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.6E-12	208	244	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.53E-12	209	244	No hit	No description
PROSITE pattern	PS00344	0	210	237	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.4E-13	210	244	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MAAANPQPLQ ARLFEEHAQG TIQIEDDDGE YEDDAMDDVE DANVNSVNVA EHGIGVVGGV 60 SGGGGGGVVM ASRTSELTLS FEGEVYVFPA VTPEKVQAVL LLLGGRDIPT GVPTIEVPFD 120 QNNRGVGDLP KRSNLSRRIA SLVRFREKRK ERCFDKKIRY TVRKEVAQRM HRKNGQFASL 180 KESTSTSSWD SSQTGVQDGT PHPETVVRRC QHCGVSENNT PAMRRGPAGP RTLCNACGLM 240 WANKVWDTER SQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP326308	0.0	KP326308.1 Gossypium barbadense JAZ18 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017981189.1	0.0	PREDICTED: GATA transcription factor 24 isoform X2
Swissprot	Q8GXL7	2e-64	GAT24_ARATH; GATA transcription factor 24
TrEMBL	A0A061FEJ9	0.0	A0A061FEJ9_THECC; ZIM-like 1 isoform 6
STRING	EOY15486	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	3e-62	ZIM-like 1

Link Out ? help Back to Top
Phytozome	Thecc1EG034531t7
Entrez Gene	18591826

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]