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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG034470t1 | ||||||||
Common Name | TCM_034470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ZF-HD | ||||||||
Protein Properties | Length: 255aa MW: 27288.2 Da PI: 6.8304 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.4 | 7.3e-33 | 54 | 108 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY+eClkNhA+s+GghavDGCgEfm++ geegt +alkCaAC+CHRnFHR+e + Thecc1EG034470t1 54 TIRYRECLKNHAVSIGGHAVDGCGEFMAA-GEEGTLDALKCAACNCHRNFHRKEGD 108 78**************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-23 | 48 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.2E-30 | 55 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.0E-29 | 56 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.699 | 57 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.98E-21 | 177 | 248 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-32 | 179 | 248 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.3E-27 | 190 | 246 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDFDEHEDQD EEMGMAVPPG YDSLGNSQAA LSRMGPASGG EGPASATPRK VGSTIRYREC 60 LKNHAVSIGG HAVDGCGEFM AAGEEGTLDA LKCAACNCHR NFHRKEGDGE GNTYNPHHHQ 120 HHPQFSAYYR APPPAGYLHL TPPPQHRPLA LPAASGGGGG GIAGGYSRED EDVSNPSSSG 180 GGGGGSGGLK KRFRTKFTSE QKEKMLEFAE RLGWRIQKHD EAAVEQFCEE TGVKRHVLKV 240 WMHNNKHTLV FSVG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-30 | 191 | 248 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017981879.1 | 1e-154 | PREDICTED: zinc-finger homeodomain protein 2 | ||||
Swissprot | Q6YXH5 | 3e-75 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A061FDI9 | 0.0 | A0A061FDI9_THECC; Transcription factor, putative | ||||
STRING | EOY15390 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4505 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-72 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG034470t1 |
Entrez Gene | 18591774 |
Publications ? help Back to Top | |||
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