PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034392t1
Common NameTCM_034392
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 772aa    MW: 84878.9 Da    PI: 4.558
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034392t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.8e-10618661146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r +WT+++ el++ a++q+G++ +++I + ++ gR++ q+k+++ +
  Thecc1EG034392t1 618 RAKWTKQDTELFYGAIRQFGPD-FSLIQQLFP-GRSRHQIKLKFKN 661
                       569*****************88.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.6E-26611693No hitNo description
PROSITE profilePS5129310.747616667IPR017884SANT domain
SMARTSM007176.7E-9617665IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-6618661IPR009057Homeodomain-like
SuperFamilySSF466893.74E-10620668IPR009057Homeodomain-like
CDDcd001674.25E-7620661No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MDDFDIFSDK SLVTQARAGA KFQPRAKLKS RKENVASIPC NKKEEVVTQS LSSLDNRLTS  60
PRGLSVDTST TSGTEESLKT NYEDLSQIAV NKADDVGFID APRSDIPVTV NDHDSHSVPN  120
IWAKDVDFDL DPFDDVANQV TNNGRAGGKF EPKTRPKACI VDPDGVVDDC GSSEVMTSSQ  180
VAVTDSLLSE VAVSNGCHDS HSSFGRSVGE NADIFSGLEC LDQFLTQSSN NNGGIQIDDE  240
GTGAQEAGAF PDVETQDIMS GATIASGRHA GKFKPKTRLQ TSVVPSQPAV VDIVMHPPNS  300
PFVPSETMSV ENSIPDLSPM DLGAFIPPDP STSEFPVNEE LTNLTEASNP GVTLSGDFPS  360
MPGKLSSNSR KREASPIPNP SQKSKQSSAS DGGNENGKAT KRLRKQVTSP KLVDDHEDGT  420
CNDEGLATEP PTSSAIDEDR DDGDDDDEYN AESAFSKRRT SRRSKKPMAE NEKPPRKRKT  480
AKEKQVEKQK KVNEASDQPT EEQPRKFSHS TRRKRRFVDE SLLHTPEDEI DFAKVALKDI  540
ILLADYKERI AKKEAKASKI PLTNQSTKNT FPEENAHNEE SSIASEQDQG FTDDQMSGGA  600
QSSSFFLNYQ SYMDKEPRAK WTKQDTELFY GAIRQFGPDF SLIQQLFPGR SRHQIKLKFK  660
NEERRYPLRL SEALASRTKD HSYFEKVIEQ LQQVAGQAER ESTGDVSMDL TREEAELTPE  720
ANGKATKAEQ DEDEAVGDQQ ADVAEDRSTF KSDETDDDDH EDILSSYRSA F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1456478KRRTSRRSKKPMAENEKPPRKRK
2472478KPPRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981351.10.0PREDICTED: transcription factor TFIIIB component B'' homolog isoform X2
TrEMBLA0A061FDZ00.0A0A061FDZ0_THECC; Homeodomain superfamily protein isoform 1
STRINGEOY152610.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-43MYB_related family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]