PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034055t1
Common NameTCM_034055
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ZF-HD
Protein Properties Length: 297aa    MW: 32678.7 Da    PI: 8.4184
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034055t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.53.3e-3389145360
       ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                        +rY+eClkNhAas+Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+ev+ e
  Thecc1EG034055t1  89 VIRYRECLKNHAASIGGNVYDGCGEFMPS-GEEGTLEALKCAACDCHRNFHRKEVDGE 145
                       689*************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2484143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.7E-3090142IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-3191142IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.90992141IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.99E-19222292IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-31231292IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-29232289IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEVRGQEHDI KAPGSSGFGH HSPGADRRRD GNHNGTAVLT CTETLDHVHR PQRQQSLGQG  60
RSPHPDRVTA SGAAVAPISV SSNTKPSSVI RYRECLKNHA ASIGGNVYDG CGEFMPSGEE  120
GTLEALKCAA CDCHRNFHRK EVDGETQFGP NSSRRSLMLN PLQLPPPLPS PTMLHHHQRY  180
SVHTSPSSAM VAPMNVAFGS GGGCGTESSS EDLMFQSNAE GMPPPPPYVL SKKRFRTKFT  240
QEQKDKMLEF AEKLGWRINK QDEEEVEKFC AEVGVKRQVF KVWMHNNKNV KKQPQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-252312891674ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3938311e-57GQ393831.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0796 SSR marker CGR5914 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017558.20.0PREDICTED: zinc-finger homeodomain protein 5
RefseqXP_007017559.20.0PREDICTED: zinc-finger homeodomain protein 5
RefseqXP_017981807.10.0PREDICTED: zinc-finger homeodomain protein 5
SwissprotQ9FRL54e-69ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A061FD050.0A0A061FD05_THECC; Homeobox protein 33 isoform 1
STRINGEOY147840.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72792543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.19e-68homeobox protein 33
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]