PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG033803t1
Common NameTCM_033803
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 267aa    MW: 29652.7 Da    PI: 7.1633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG033803t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-1354101455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h   Er RR+++++ f+ L  llP++      K +K++i+ +Av YIk+Lq
  Thecc1EG033803t1  54 MHIWTERERRKKMRNMFSSLHALLPQL----PAKADKSTIVDEAVTYIKNLQ 101
                       56678*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-1648111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.88450100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.00E-125399No hitNo description
Gene3DG3DSA:4.10.280.102.7E-1554112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-1055101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-958106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.21E-5184238No hitNo description
Gene3DG3DSA:3.30.70.2608.1E-4188261No hitNo description
CDDcd048731.77E-4189251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MKPYNSSSNS PYIDMEMGTV AVAQGGQKRS RKGGFKNGKA KVCGDAGDQS VHEMHIWTER  60
ERRKKMRNMF SSLHALLPQL PAKADKSTIV DEAVTYIKNL QQTLQTLQKQ KLEKLRSATM  120
VDYDQSSIIT SQMQVPESRE AFLADQGPSN NYPMTTDVSQ TFPAPISPAC FQTWFSPNVV  180
INMCGDDAQV SVCSPRKPGV LTTIMYILEK HQLEVVSAHI SSDQYRSMYM IHVHADGASD  240
QFSEAVSVEE TFKLAAGEMN LWLLSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017189.10.0PREDICTED: transcription factor bHLH95
TrEMBLA0A061FIU30.0A0A061FIU3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOY144140.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.17e-41bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]