PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG033706t1
Common NameTCM_033706
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 490aa    MW: 53503.4 Da    PI: 8.0564
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG033706t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57e-11110134226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +++ C +++ t tCk+Gd+CkF H+
  Thecc1EG033706t1 110 GEKDCAHYMLTRTCKFGDSCKFDHP 134
                       7889********************8 PP
2zf-CCCH33.95.4e-11163187327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++ C++f++t  Ck+G++CkF+H++
  Thecc1EG033706t1 163 EPDCPYFLKTQRCKFGSKCKFNHPK 187
                       789********************96 PP
3zf-CCCH33.85.5e-11210234327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++ C+f+ +tG Ck+G++CkF+H++
  Thecc1EG033706t1 210 EPSCSFYVKTGKCKFGATCKFHHPK 234
                       577********************96 PP
4zf-CCCH391.4e-12280304226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +++ C+f+++tG CkyG++C+++H+
  Thecc1EG033706t1 280 DEVDCPFYLKTGSCKYGSSCRYNHP 304
                       6789********************9 PP
5zf-CCCH41.42.4e-13372396226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++ +C ++++tG Ck+GdrCkF+H+
  Thecc1EG033706t1 372 GQTECEYYMKTGDCKFGDRCKFHHP 396
                       6789********************8 PP
6zf-CCCH38.71.7e-12428449627
                       -SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                       C+++++tGtCkyG++CkF H+p
  Thecc1EG033706t1 428 CPYYMKTGTCKYGATCKFDHPP 449
                       ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0011108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507108136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5109135IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8110134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4114133IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4160187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878160188IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8163187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6165190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-5166188IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-5207234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511207235IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8210234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5211234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4213233IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6278305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.061278306IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-10280304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5281305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5284303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591370398IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-7370397IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-7370398IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-11372396IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-6376396IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-6422449IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.272422450IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6426449IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5428447IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-10428449IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MANQLYGYTP RYSSPSPTAS LSSTLQRYLD SETTPHSHLL HHLQPWPPGA DVPSSAGPIK  60
RPSEVLYHQN VLDAHNTIGQ TEAWYSTSSL VKRPRLESAS NLPIYPQRPG EKDCAHYMLT  120
RTCKFGDSCK FDHPIWVPEG GIPDWKEVPL ATTSESLPER AGEPDCPYFL KTQRCKFGSK  180
CKFNHPKDKL AISGAFENIQ VAVLPERPSE PSCSFYVKTG KCKFGATCKF HHPKDIQIAS  240
SGQDNARGEQ PEIVTKTGGA TADVKPALFH NSKGLPIRPD EVDCPFYLKT GSCKYGSSCR  300
YNHPDRNAFN PPAAVLGHSL VASASNLNIG VVTPAASIYQ TIDPRLGQST LLAQPTFPTL  360
GVAPTVYPQR PGQTECEYYM KTGDCKFGDR CKFHHPIDRS VSKTKQTSEQ AVKLTLAGLP  420
RREGGVHCPY YMKTGTCKYG ATCKFDHPPP GEVMGIATAQ GTSTTVGGEE KGEMEEAETV  480
ETNTAMRSC*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818003e-78LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132553e-78LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007022800.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A061FAF20.0A0A061FAF2_THECC; Floral homeotic protein isoform 1
STRINGEOY143250.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]