PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG033560t1
Common NameTCM_033560
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 532aa    MW: 59641.5 Da    PI: 8.4443
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG033560t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-17239284147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg W + Ed +l+++v+++G+ +W++Ia++++ gRt+k+c++rw++ 
  Thecc1EG033560t1 239 RGHWKPAEDSKLKELVALYGPQNWNLIAEKLQ-GRTGKSCRLRWFNQ 284
                       899*****************************.***********996 PP
2Myb_DNA-binding491.4e-15291334146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++++++eE+e+l  a+k +G++ W+ Iar ++ gRt++ +k+ w+ 
  Thecc1EG033560t1 291 KKAFSEEEEERLMTAHKAYGNK-WAMIARLFP-GRTDNAVKNQWHV 334
                       679*******************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.665234289IPR017930Myb domain
SMARTSM007171.1E-14238287IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-28239332IPR009057Homeodomain-like
PfamPF002491.5E-16239284IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-26240292IPR009057Homeodomain-like
CDDcd001672.74E-13242283No hitNo description
SMARTSM007171.4E-13290338IPR001005SANT/Myb domain
PROSITE profilePS5129418.445290340IPR017930Myb domain
PfamPF002491.6E-12291333IPR001005SANT/Myb domain
CDDcd001672.71E-10293333No hitNo description
Gene3DG3DSA:1.10.10.604.7E-20293339IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MSFHRNSQTR GPVSVREVKL PQPKMSSRVD FLLERKQKLF FFLLLLTSTG LSISHFYLFI  60
LCSSLSLACF LCKYLSLLLF VFICTFFLPF WDMKMTVQQF HNSSCCHQEN NGLSNCYSIY  120
SPSSSSMEVL KHMDSLSITP THHVYSSQNI CYCGDNIPVK GHMGISYVIN CPCSLEEDAR  180
NCEVGDHFSK GSESIDEFGE NNAAVSMEDI RRRICMNEGN PGDCFLSGKD VGQSKVCARG  240
HWKPAEDSKL KELVALYGPQ NWNLIAEKLQ GRTGKSCRLR WFNQLDPRIN KKAFSEEEEE  300
RLMTAHKAYG NKWAMIARLF PGRTDNAVKN QWHVIMARKY REQASAYRRR KLSQAIQRKM  360
EENGNLNCRE AANGNNTNSP KNPSVGSNGS YNKTSRKGAA TCVRDLFLGS KSHNSFSPGE  420
GACRNQTPLD FFSDYIRPES FRWNSRQCNM LHDETTLTVS HPYSHPSQML MQQSSNHQLS  480
GFSDSIASAP QVTVTETSSS SPTAAEKAAA SHLETTASPP PFIDFLGVGA S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-332393397107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974420.10.0PREDICTED: transcription factor MYB35 isoform X1
TrEMBLA0A061FAA00.0A0A061FAA0_THECC; Myb domain protein 105, putative
STRINGEOY142550.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.15e-71myb domain protein 117
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]