PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG033386t1
Common NameTCM_033386
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 282aa    MW: 31753.1 Da    PI: 5.3859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG033386t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09164207755
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++ r RR++i ++ +eL +l+P  +      K++ ae+L  A +YIk+Lq
  Thecc1EG033386t1 164 IAARERRRKITEKTQELGKLVPGgN------KMNTAEMLHAAFKYIKYLQ 207
                       56799*****************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.11E-8149210No hitNo description
PROSITE profilePS5088812.716157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-12161215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-11162214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-7165207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVLSSYSNWG TDLQNVHSEP IHYAKQPPAQ LVAGDHHLEY YWDTFELPCA FLDPYIDLNE  60
NFLYPENYNA LLPYLSSPYD PLSSFSPENE IIPYENFSSY PCPKRQKLIE GHCCSDFVPA  120
FSDGVALNSC PVPEHQSIHQ KNLDGNSVES SKRINAKSVS VQSIAARERR RKITEKTQEL  180
GKLVPGGNKM NTAEMLHAAF KYIKYLQAQV GILEFMDSFS EKEKATRKES MQIVTSPKVQ  240
EKLSMEEKCL VPKDVVLSLT TLSKPPLSDE LSQLLAFAPL E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017980117.10.0PREDICTED: transcription factor bHLH53
TrEMBLA0A061F9U50.0A0A061F9U5_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOY141200.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1695449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.17e-26bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]