PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HD-ZIP

Protein Properties

Length: 174aa MW: 20296 Da PI: 9.3367

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG031644t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.8	1.6e-17	14	67	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++++eq++ Le+ F n+++ e + +LA++lg++ rqV +W+qN+Ra++k Thecc1EG031644t1 14 NKKRLNQEQVRLLEKSFTANKKLEPELKLHLANQLGVPPRQVAIWYQNKRARWK 67 56789************************************************9 PP
2	HD-ZIP_I/II	108.5	4.7e-35	14	105	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl++eqv+lLE+sF++++kLepe K +la++Lg+ prqva+W+qn+RAR+kt+ lE dy++L+ ++++ +e++rLek+v+ L+eel++ Thecc1EG031644t1 14 NKKRLNQEQVRLLEKSFTANKKLEPELKLHLANQLGVPPRQVAIWYQNKRARWKTQSLELDYNTLQVKLENALSEKRRLEKDVKYLQEELRK 105 79**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.613	9	69	IPR001356	Homeobox domain
SMART	SM00389	2.8E-15	11	73	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.65E-17	11	78	IPR009057	Homeodomain-like
CDD	cd00086	8.09E-13	12	70	No hit	No description
Pfam	PF00046	5.8E-15	14	67	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.3E-18	16	76	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	44	67	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MDFHGQKLYA PKHNKKRLNQ EQVRLLEKSF TANKKLEPEL KLHLANQLGV PPRQVAIWYQ 60 NKRARWKTQS LELDYNTLQV KLENALSEKR RLEKDVKYLQ EELRKAQEMM FAMNNYQKDH 120 HHRHPPFVSC TSAGSSEEGG SSSFREDNVH DHAVLQIDEL YACLIGADRP TWS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616439	1e-93	JX616439.1 Gossypium hirsutum clone NBRI_GE61116 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007021591.2	1e-128	PREDICTED: homeobox-leucine zipper protein ATHB-52
Swissprot	Q9FN29	1e-42	ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A061F7W1	1e-127	A0A061F7W1_THECC; Homeobox-leucine zipper protein ATHB-52, putative
STRING	EOY13116	1e-128	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12107	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	2e-44	homeobox protein 52

Link Out ? help Back to Top
Phytozome	Thecc1EG031644t1
Entrez Gene	18594078

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]