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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG031595t1 | ||||||||
Common Name | TCM_031595 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | SBP | ||||||||
Protein Properties | Length: 233aa MW: 26567.1 Da PI: 9.2858 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 138.2 | 2.4e-43 | 68 | 144 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqve+C dls+ak+yhrrhkvCe+h+kap v+v+gl+qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk++a Thecc1EG031595t1 68 CQVEKCGLDLSDAKRYHRRHKVCEIHAKAPFVVVAGLRQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSA 144 **************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.6E-36 | 61 | 129 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 33.154 | 65 | 142 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-40 | 66 | 145 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.7E-33 | 68 | 141 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
METTDFRRKS ALKTKMNKGF IAEDLDDDME EEEEEGVGDH GFPDDEKKKK AYGKRGSSGG 60 AGVSPPSCQV EKCGLDLSDA KRYHRRHKVC EIHAKAPFVV VAGLRQRFCQ QCSRFHELSE 120 FDEAKRSCRR RLAGHNERRR KSSAESSTEG SSRKGMSSQL RESQCRQADD QRARVPIAIP 180 LSSVSQWFMH FTMYWYLLYY VGGFNNYIRH RNLSLVSVLL KPVFSCLACR VI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-37 | 56 | 141 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00359 | DAP | Transfer from AT3G15270 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156. {ECO:0000269|PubMed:16914499}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ622313 | 1e-133 | KJ622313.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017980011.1 | 1e-129 | PREDICTED: squamosa promoter-binding-like protein 4 | ||||
Swissprot | Q9S758 | 2e-44 | SPL5_ARATH; Squamosa promoter-binding-like protein 5 | ||||
TrEMBL | A0A061F852 | 1e-173 | A0A061F852_THECC; Squamosa promoter binding protein-like 3 isoform 1 | ||||
STRING | EOY13069 | 1e-126 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 4e-42 | squamosa promoter binding protein-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG031595t1 |
Entrez Gene | 18594039 |
Publications ? help Back to Top | |||
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