PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 597aa MW: 66239.7 Da PI: 6.5533

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG031132t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	428.2	6.3e-131	223	592	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL+ cA+a+s++++ ++l+a+ ++ +s g+p+qRl ay++eAL ar s+s++y+a +++e + ++ l+++++++e++P+lkf Thecc1EG031132t3 223 LKQLLIVCAQALSENNMDDFDKLIAKARNAVSICGEPIQRLGAYMVEALVARKEASGSNIYRARRCREPE---GKDLLSYMQILYEICPYLKF 312 679****************************************************************9...9*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 ++++aN aI ea +e+r+HiiDf i+qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+ + le++g+rLa + e++++p+ef+ v Thecc1EG031132t3 313 GYMAANGAIAEACRTEDRIHIIDFHIGQGTQWVTLLQALAARPGGAPHVRITGIDDPLSKyaRGGGLEAVGRRLAALSEKFNIPVEFHG-VPV 404 ****************************************************999989999********************.688 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 d++ +L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv ++veqe+++n+++Fl rf+e+l+yy a+f+s++++lpr Thecc1EG031132t3 405 FAPDITRGMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLSPKVTTLVEQESNTNTAPFLPRFIETLDYYLAMFESIDETLPR 497 89999************************************************************************************ PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 + +eri+vE+++l+r+ivnv+aceg+er+erhe ++kW++rl++aGF+++pls+++++ +++llr ++ + y++ e++g+++lgWkdr+L+s+ Thecc1EG031132t3 498 DRKERINVEQHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRSLLRCYS-KHYKLVEKDGAMLLGWKDRNLISA 589 *************************************************************999.55****************** PP GRAS 371 SaW 373 SaW Thecc1EG031132t3 590 SAW 592 * PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.924	197	574	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-128	223	592	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence Send to blast
MDAHQLFSYG VTGASLSYST SYSTVPSIPN RLFSSLKSDI GNSPNSPFSS QFDSPFSTQF 60 DCDTNTTLSD SQEQHSSTEN LSGLSPSCNS SFESNTYCHK LSPSLDCKRE ILPLCSGGTS 120 YIQDANSSHK IIYTLQELET ALMAPDADEE VTTPNVSCGE SSRPQTTGQR SRAWSQEHQG 180 SLVLQPQTSF VSRHRQSTEV SHAEKRQKAI GDLSLQDIPP GNLKQLLIVC AQALSENNMD 240 DFDKLIAKAR NAVSICGEPI QRLGAYMVEA LVARKEASGS NIYRARRCRE PEGKDLLSYM 300 QILYEICPYL KFGYMAANGA IAEACRTEDR IHIIDFHIGQ GTQWVTLLQA LAARPGGAPH 360 VRITGIDDPL SKYARGGGLE AVGRRLAALS EKFNIPVEFH GVPVFAPDIT RGMLDVRPGE 420 ALAVNFPLQL HHTPDESVDV NNPRDGLLRM VKSLSPKVTT LVEQESNTNT APFLPRFIET 480 LDYYLAMFES IDETLPRDRK ERINVEQHCL ARDIVNVIAC EGKERVERHE LFGKWKSRLT 540 MAGFRQYPLS SYVNSVIRSL LRCYSKHYKL VEKDGAMLLG WKDRNLISAS AWHCDS*

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence Send to blast

MDAHQLFSYG VTGASLSYST SYSTVPSIPN RLFSSLKSDI GNSPNSPFSS QFDSPFSTQF  60
DCDTNTTLSD SQEQHSSTEN LSGLSPSCNS SFESNTYCHK LSPSLDCKRE ILPLCSGGTS  120
YIQDANSSHK IIYTLQELET ALMAPDADEE VTTPNVSCGE SSRPQTTGQR SRAWSQEHQG  180
SLVLQPQTSF VSRHRQSTEV SHAEKRQKAI GDLSLQDIPP GNLKQLLIVC AQALSENNMD  240
DFDKLIAKAR NAVSICGEPI QRLGAYMVEA LVARKEASGS NIYRARRCRE PEGKDLLSYM  300
QILYEICPYL KFGYMAANGA IAEACRTEDR IHIIDFHIGQ GTQWVTLLQA LAARPGGAPH  360
VRITGIDDPL SKYARGGGLE AVGRRLAALS EKFNIPVEFH GVPVFAPDIT RGMLDVRPGE  420
ALAVNFPLQL HHTPDESVDV NNPRDGLLRM VKSLSPKVTT LVEQESNTNT APFLPRFIET  480
LDYYLAMFES IDETLPRDRK ERINVEQHCL ARDIVNVIAC EGKERVERHE LFGKWKSRLT  540
MAGFRQYPLS SYVNSVIRSL LRCYSKHYKL VEKDGAMLLG WKDRNLISAS AWHCDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-62	230	592	26	378	Protein SCARECROW
5b3h_A	1e-62	230	592	25	377	Protein SCARECROW
5b3h_D	1e-62	230	592	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007021110.2	0.0	PREDICTED: chitin-inducible gibberellin-responsive protein 1
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A061F7I0	0.0	A0A061F7I0_THECC; GRAS family transcription factor isoform 1
STRING	EOY12635	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-179	GRAS family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG031132t3
Entrez Gene	18593701

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]