PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG030648t1

Common Name

TCM_030648

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YB

Protein Properties

Length: 280aa MW: 30379.4 Da PI: 8.0668

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG030648t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	183.9	1.3e-57	125	220	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +eqdrflPianvsrimkk+lPanakisk+aketvqecvsefisf+t+easdkcq+ekrktingddllwa++tlGfedyveplkvyl+++re+e Thecc1EG030648t1 125 KEQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREME 217 79******************************************************************************************* PP NF-YB 95 gek 97 gek Thecc1EG030648t1 218 GEK 220 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.9E-54	121	227	IPR009072	Histone-fold
SuperFamily	SSF47113	1.55E-40	127	228	IPR009072	Histone-fold
Pfam	PF00808	8.9E-28	130	194	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.2E-20	158	176	No hit	No description
PROSITE pattern	PS00685	0	161	177	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.2E-20	177	195	No hit	No description
PRINTS	PR00615	2.2E-20	196	214	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MLSGRISVTA RMKSTVYIPA MESAPFPSTL ILYLLENISS FCWILRLLNP EDTIEERKKT 60 PDFGTLLDVF SRHPEPYVAA NKATSRTQRS KAMADSDTES GGAQNNGNNT ASNATGNSSD 120 LSSLKEQDRF LPIANVSRIM KKALPANAKI SKEAKETVQE CVSEFISFIT GEASDKCQKE 180 KRKTINGDDL LWAMTTLGFE DYVEPLKVYL QRFREMEGEK TAVARDKDAP LGGGVGGGGM 240 YSMMVHQHQG HVYGSSGFHQ MGSSGLGKGG PGNNLIGPR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	5e-46	124	215	1	92	Transcription factor HapC (Eurofung)
4g92_B	5e-46	124	215	1	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527494	3e-46	HQ527494.1 Gossypium herbaceum clone NBRI_B2_815 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021287813.1	1e-135	nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	4e-69	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A061F5R2	0.0	A0A061F5R2_THECC; Nuclear transcription factor Y subunit B-3
STRING	EOY12032	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	5e-66	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Thecc1EG030648t1
Entrez Gene	18593292

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]