PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG030504t1 | ||||||||
Common Name | TCM_030504 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 705aa MW: 75751.4 Da PI: 5.9025 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 24.4 | 5.9e-08 | 319 | 335 | 2 | 18 |
--SS-EEEEEEE--TT- CS WRKY 2 dDgynWrKYGqKevkgs 18 dDgynWrKYGqK+vkg+ Thecc1EG030504t1 319 DDGYNWRKYGQKQVKGK 335 8**************95 PP | |||||||
2 | WRKY | 103.8 | 9.6e-33 | 501 | 559 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+ Thecc1EG030504t1 501 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 559 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 8.88 | 313 | 334 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.5E-6 | 315 | 335 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-7 | 316 | 347 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.9E-4 | 318 | 346 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-4 | 319 | 335 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.2E-37 | 486 | 561 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-28 | 493 | 561 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.664 | 496 | 561 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-37 | 501 | 560 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.3E-25 | 502 | 559 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 705 aa Download sequence Send to blast |
MAGIDDNVAI IGDWIPPTPS PRTFFAALLG DDIGSKPVSE THGENKTEGL FLGSRGIMTA 60 ENSDNKDAHQ GHEQLKEFRS ISEQKSSSRG GLVERMAARA GFNAPRLNTE SIRSADLSLN 120 PEICSPYLTI PPGLSPTTLL ESPVFVSNSL AQPSPTTGKF PFIPNGNGRS SFSESSDKSK 180 DNYFEDINAS SFAFKPFAES NSSFLLGAMS KITPASVPQQ SFPNIEVSVQ SENPLPSQNV 240 DPGKVHSQNS NRPSLQADFS RSSTEKDTGS NNSADQRVFD PVGGTAENSP PLDEPQDEEG 300 DQRGSGDCMA GGVGSAPSDD GYNWRKYGQK QVKGKIIYKG AHNHPKPPPN RRSAIGSSNP 360 LTDMQPEVPE QPGLQHGTDG DPVWATAQKG TVAATHDWRH DSIEVTSSAP VGPEYGNVQA 420 PNGTHFESGD AVDASSTFSN DEDEDDRGTH GSVSLGYDGE GDESESKRRK IEAYAPEMSG 480 ATRAIREPRV VVQTTSEVDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTSA GCTVRKHVER 540 ASHDLKSVIT TYEGKHNHDV PAARSSSHVN SATCSTVTAQ GASSVQTHVH RPEPSQLHNS 600 MVRPASFGPY TLPGRQQLGP SPGFSFGMNQ PGLANLAMAG LGPGQAKLPV LPVHPFMPQQ 660 RQMNEMGFML PKGEPKMEPM SEPGLNLSNN STVYQQIMSR LPQI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-36 | 492 | 562 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-36 | 492 | 562 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021287557.1 | 0.0 | probable WRKY transcription factor 2 isoform X2 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A061F571 | 0.0 | A0A061F571_THECC; WRKY DNA-binding protein 2 isoform 1 | ||||
STRING | EOY11828 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56270.1 | 0.0 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG030504t1 |
Entrez Gene | 18593160 |
Publications ? help Back to Top | |||
---|---|---|---|
|