PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 491aa MW: 56861.5 Da PI: 6.7127

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG030416t5	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.4	8.5e-22	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk t +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel Thecc1EG030416t5 68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPLRKKPTGEHHRDRKSVRCGCDAKMYLSKEVidgVSQWFVVQFSNVHNHELL 159 59******************8888.***************************************99867789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-19	68	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-20	291	382	IPR018289	MULE transposase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MTSVPSKNIW IRRQQCPCGD WKCYVTYEGD AEETSISSQL VKNESVQSEA MVAPYVGMVF 60 KSDEDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPLR KKPTGEHHRD 120 RKSVRCGCDA KMYLSKEVID GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALLNEKREN 240 DTMELLEACK ATKEADQDFV YDYTVDENDK VENIAWSYGD SVNSYTMYGD VVYFDTTYRS 300 ITYDMLFGAW IGIDNNGRPI FFGCVLLQDE TMRSFAWALQ TFISFMKGRC PQTISTDLDP 360 GLRDAIRSEL PSTKHVMSIW NILPKVSSWF PLQLGSQYAE FKSEFDALYR LESTEDFELR 420 WNQMVSIFGL GSDKHITLLY SLRTSWAQSY VRGYFLARMV TTTYSKSVDA FLKGIFSAQT 480 SLRRFFEQVY *

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MTSVPSKNIW IRRQQCPCGD WKCYVTYEGD AEETSISSQL VKNESVQSEA MVAPYVGMVF  60
KSDEDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPLR KKPTGEHHRD  120
RKSVRCGCDA KMYLSKEVID GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALLNEKREN  240
DTMELLEACK ATKEADQDFV YDYTVDENDK VENIAWSYGD SVNSYTMYGD VVYFDTTYRS  300
ITYDMLFGAW IGIDNNGRPI FFGCVLLQDE TMRSFAWALQ TFISFMKGRC PQTISTDLDP  360
GLRDAIRSEL PSTKHVMSIW NILPKVSSWF PLQLGSQYAE FKSEFDALYR LESTEDFELR  420
WNQMVSIFGL GSDKHITLLY SLRTSWAQSY VRGYFLARMV TTTYSKSVDA FLKGIFSAQT  480
SLRRFFEQVY *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007026336.2	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_007026338.2	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A061GHR2	0.0	A0A061GHR2_THECC; Far1-related sequence 10 isoform 5
STRING	EOY28958	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Thecc1EG030416t5
Entrez Gene	18597320

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]