PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG030051t1 | ||||||||
Common Name | TCM_030051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 467aa MW: 50566.2 Da PI: 5.7519 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.7 | 1.3e-05 | 356 | 393 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Thecc1EG030051t1 356 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 393 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.973 | 344 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.09E-5 | 354 | 397 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.1E-9 | 354 | 404 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-11 | 354 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:2000214 | Biological Process | regulation of proline metabolic process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MAEEFHAGIC GGTWWNSSKS MFSGCSSPCS AGIADMGSFG SWGADMVDTK AARSCDQESN 60 NSVSDSSIVF QGAHQKPQQA DSDSGGSSIL IDSTLQMMGF GLSSSTTSDW NQSLLRSNGR 120 TESYNSILQE DINSRLSCRQ ETGMDSSQIQ KNWSPKTYAS PGEDSSITTF KPINQDFSVT 180 KSGDSTPACQ GLSAGFPMGS ASYGYPSTVL LQSLFEPDPQ PQQSLLNNRS INYMSAPATY 240 GANANELSSP PWPKLAPCLR PSLPKQQQPS SLHFSNNTPF WNASSTGLSD VKASFLPSPQ 300 SQFLAQTFDE KPNCPSLTIK TNTEEVRDSM KKGSSEPPFK RPRIETPSPL PTFKVRKEKL 360 GDRITALQQL VSPFGKTDTA SVLHEAIEYI KFLHDQVNVL STPYMKQAAA ASIQQQQSPD 420 KLKEPEGPKQ DLRSRGLCLV PISSTFPVAN ETTADFWTPT FGGTFR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007025886.2 | 0.0 | PREDICTED: transcription factor bHLH112 | ||||
TrEMBL | A0A061GGF0 | 0.0 | A0A061GGF0_THECC; Transcription factor, putative | ||||
STRING | EOY28508 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8062 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 8e-73 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG030051t1 |
Entrez Gene | 18597015 |
Publications ? help Back to Top | |||
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