PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG030051t1
Common NameTCM_030051
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 467aa    MW: 50566.2 Da    PI: 5.7519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG030051t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-053563931254
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Thecc1EG030051t1 356 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 393
                       677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-5354397No hitNo description
Gene3DG3DSA:4.10.280.108.1E-9354404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-11354407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAEEFHAGIC GGTWWNSSKS MFSGCSSPCS AGIADMGSFG SWGADMVDTK AARSCDQESN  60
NSVSDSSIVF QGAHQKPQQA DSDSGGSSIL IDSTLQMMGF GLSSSTTSDW NQSLLRSNGR  120
TESYNSILQE DINSRLSCRQ ETGMDSSQIQ KNWSPKTYAS PGEDSSITTF KPINQDFSVT  180
KSGDSTPACQ GLSAGFPMGS ASYGYPSTVL LQSLFEPDPQ PQQSLLNNRS INYMSAPATY  240
GANANELSSP PWPKLAPCLR PSLPKQQQPS SLHFSNNTPF WNASSTGLSD VKASFLPSPQ  300
SQFLAQTFDE KPNCPSLTIK TNTEEVRDSM KKGSSEPPFK RPRIETPSPL PTFKVRKEKL  360
GDRITALQQL VSPFGKTDTA SVLHEAIEYI KFLHDQVNVL STPYMKQAAA ASIQQQQSPD  420
KLKEPEGPKQ DLRSRGLCLV PISSTFPVAN ETTADFWTPT FGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025886.20.0PREDICTED: transcription factor bHLH112
TrEMBLA0A061GGF00.0A0A061GGF0_THECC; Transcription factor, putative
STRINGEOY285080.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.38e-73bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]