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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG029695t2 | ||||||||
Common Name | TCM_029695 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | Trihelix | ||||||||
Protein Properties | Length: 302aa MW: 33782 Da PI: 8.9863 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.8 | 4.3e-16 | 32 | 123 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+++ + +L++a ++ +l+rg+l++++W++v++++ + ++ +r+ +qCk++++ ++k+yk +k++ + + + +s++p+f++l+a Thecc1EG029695t2 32 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVTSSNGTLTSSWPFFERLDA 123 7****************************************99999***************************999888899*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.0E-26 | 30 | 124 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MGDLTDSLTP STTPTPLSTT THSRPLPVRE DCWSEEATST LVDAWGRRYL ELNRGNLRQK 60 DWQDVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKIE KARVTSSNGT LTSSWPFFER 120 LDALIGSNFS AKKPSPSPKI SPKPSPRLSP RIPGSPPVAL PLPMPYRRTP ASATVVALPQ 180 KRPADDGYFR RNYSAVAAAA AAAAAETDEE EGEESEAEES EGEGEEREGM SRLARAIERF 240 GEVYERVEGE KLRQMVELEK QRMQFAKDLE VQRMRMFMDT QVQLERIKRG KRSSGSSDIY 300 S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007025374.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 3e-34 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A061GEJ1 | 0.0 | A0A061GEJ1_THECC; Sequence-specific DNA binding transcription factors isoform 2 | ||||
STRING | EOY27995 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 1e-41 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG029695t2 |
Entrez Gene | 18596687 |
Publications ? help Back to Top | |||
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