PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029695t1

Common Name

TCM_029695

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 359aa MW: 40146.4 Da PI: 9.4361

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029695t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.4	5.9e-16	32	123	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+++ + +L++a ++ +l+rg+l++++W++v++++ + ++ +r+ +qCk++++ ++k+yk +k++ + + + +s++p+f++l+a Thecc1EG029695t1 32 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVTSSNGTLTSSWPFFERLDA 123 7**************************************99999***********************999888899*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-26	30	124	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MGDLTDSLTP STTPTPLSTT THSRPLPVRE DCWSEEATST LVDAWGRRYL ELNRGNLRQK 60 DWQDVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKIE KARVTSSNGT LTSSWPFFER 120 LDALIGSNFS AKKPSPSPKI SPKPSPRLSP RIPGSPPVAL PLPMPYRRTP ASATVVALPQ 180 KRPADDGYFR RNYSAVAAAA AAAAAETDEE EGEESEAEES EGEGEEREGM SRLARAIERF 240 GEVYERVEGE KLRQMVELEK QRMQFAKDLE VQRMRMFMDT QVQLERIKRG KRSSGSSGIY 300 VSQVEAIGVN LGFWIFKTFI ASHQGKSFDC FLRGKNMKNI DFYSHPLKVH TVLADTGL*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MGDLTDSLTP STTPTPLSTT THSRPLPVRE DCWSEEATST LVDAWGRRYL ELNRGNLRQK  60
DWQDVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKIE KARVTSSNGT LTSSWPFFER  120
LDALIGSNFS AKKPSPSPKI SPKPSPRLSP RIPGSPPVAL PLPMPYRRTP ASATVVALPQ  180
KRPADDGYFR RNYSAVAAAA AAAAAETDEE EGEESEAEES EGEGEEREGM SRLARAIERF  240
GEVYERVEGE KLRQMVELEK QRMQFAKDLE VQRMRMFMDT QVQLERIKRG KRSSGSSGIY  300
VSQVEAIGVN LGFWIFKTFI ASHQGKSFDC FLRGKNMKNI DFYSHPLKVH TVLADTGL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00413	DAP	Transfer from AT3G58630	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007025374.1	0.0	PREDICTED: trihelix transcription factor ASIL2
Swissprot	Q9LJG8	2e-33	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A061GDM3	0.0	A0A061GDM3_THECC; Sequence-specific DNA binding transcription factors isoform 1
STRING	EOY27995	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9635	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	5e-41	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Thecc1EG029695t1
Entrez Gene	18596687

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]