PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029518t1
Common NameTCM_029518
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20156.2 Da    PI: 10.2694
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029518t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.14e-221153345
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      ++++s rqvtfskRr+g++KKA+EL +LC+a+va+++fs+ gk
  Thecc1EG029518t1 11 VKDSSSRQVTFSKRRTGLFKKANELATLCGAQVAIVVFSPGGK 53
                      7899************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.03E-28173IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.408161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-34160IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-20323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGRRKIEMEM VKDSSSRQVT FSKRRTGLFK KANELATLCG AQVAIVVFSP GGKPFSFGHP  60
SVEAVTQQFL NQDTKPKVSI SAQVGSQQQA KVEKLSQQLN DLLKQIQAEK KRGEMLDKEI  120
KASGKHKCQK PVNELSLDEL LQMKQSMEEL REKLKGRVSE IEASSSLLLL SNNGAKEADP  180
AN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025122.21e-128PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A061GKZ31e-128A0A061GKZ3_THECC; Agamous-like MADS-box protein A, putative
STRINGEOY277441e-129(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-48AGAMOUS-like 29
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]