PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029325t1

Common Name

TCM_029325

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 401aa MW: 44547.1 Da PI: 8.8792

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029325t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.1	8.4e-17	23	102	2	73
trihelix 2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e+++Liea++ ++er +++ + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e +++ ++ Thecc1EG029325t1 23 WTVNETMVLIEAKKMDDERRMKKSgdsegrskPTELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVREYQRRTAE 102 ***********97777666532223333338899***********************************9998643 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.039	15	87	IPR017877	Myb-like domain
Pfam	PF13837	1.5E-12	22	103	No hit	No description
Pfam	PF12316	1.2E-4	202	287	IPR024580	Dishevelled C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MHLVMADQGG NNIVMREYRK GNWTVNETMV LIEAKKMDDE RRMKKSGDSE GRSKPTELRW 60 KWVEDYCWRK GCLRSQNQCN DKWDNLMRDY KKVREYQRRT AETAEGNNNN NEGSYWEMEK 120 NARKEKNLPS NMLRQIYEHL EEVVEKKGIQ RVVAAGESGP NPNIPYVMDR PMTSVQPSLP 180 PLLQHQLPAA IPPAIALPLP ALPPLPPPTA APAPLVQPSP LPYAQPLPTV DSDTSEYSDS 240 PAKRRRRSGG NGEGTSGTAS ANNSNEVGTA ISKSASIIAE AIQASEEREE RRHRDLVSLH 300 ERRLKIEESR TEINKNGIDG LVAAINKLAN SILTLASHNN QSAPKNVRET LQQLGSDQYF 360 SGTGQRRPVN GSLNPEGCQW LTNLPKCHSG AIIGGSLVFS *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MHLVMADQGG NNIVMREYRK GNWTVNETMV LIEAKKMDDE RRMKKSGDSE GRSKPTELRW  60
KWVEDYCWRK GCLRSQNQCN DKWDNLMRDY KKVREYQRRT AETAEGNNNN NEGSYWEMEK  120
NARKEKNLPS NMLRQIYEHL EEVVEKKGIQ RVVAAGESGP NPNIPYVMDR PMTSVQPSLP  180
PLLQHQLPAA IPPAIALPLP ALPPLPPPTA APAPLVQPSP LPYAQPLPTV DSDTSEYSDS  240
PAKRRRRSGG NGEGTSGTAS ANNSNEVGTA ISKSASIIAE AIQASEEREE RRHRDLVSLH  300
ERRLKIEESR TEINKNGIDG LVAAINKLAN SILTLASHNN QSAPKNVRET LQQLGSDQYF  360
SGTGQRRPVN GSLNPEGCQW LTNLPKCHSG AIIGGSLVFS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM456255	5e-70	AM456255.2 Vitis vinifera contig VV78X217219.6, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017978043.1	0.0	PREDICTED: uncharacterized protein LOC18596375 isoform X2
TrEMBL	A0A061GK72	0.0	A0A061GK72_THECC; Homeodomain-like superfamily protein, putative
STRING	EOY27489	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-60	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG029325t1
Entrez Gene	18596375

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]