PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

M-type_MADS

Protein Properties

Length: 175aa MW: 19812.1 Da PI: 4.6415

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029234t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.7	2.4e-21	26	72	2	48
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 + e++s+rqvtfskRr+g++ KA E+S+LC+aeva++ +s++g++y+ Thecc1EG029234t1 26 KLEDESKRQVTFSKRRKGLFNKATEVSTLCGAEVAILALSKSGRVYT 72 6799*****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.53	17	77	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-21	17	85	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-23	17	76	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-18	19	39	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.8E-21	27	72	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-18	39	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-18	54	75	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MENASNTTDA TKTKKSRGRQ RIEIKKLEDE SKRQVTFSKR RKGLFNKATE VSTLCGAEVA 60 ILALSKSGRV YTTDGVDVVL DRYVADSSDS NPLPKQKEVE EDNAGFWWDQ PIDNLTLGEL 120 VEYTMALNDL RETAAARLEE LNIQNSTHLW PFVADEDVSE ADFVHQFMVE RNYY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007024752.2	1e-125	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A061GJV5	1e-126	A0A061GJV5_THECC; Mads box-like protein
STRING	EOY27374	1e-127	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4697	20	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72350.1	4e-29	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG029234t1
Entrez Gene	18596299

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]