PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG029232t3 | ||||||||
Common Name | TCM_029232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 394aa MW: 43791.3 Da PI: 4.5312 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 3e-19 | 121 | 170 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Thecc1EG029232t3 121 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 170 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.41E-32 | 121 | 179 | No hit | No description |
PROSITE profile | PS51032 | 24.092 | 121 | 178 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-32 | 121 | 180 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-36 | 121 | 184 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-22 | 121 | 180 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.0E-12 | 122 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 144 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MCGGAIISDL IPPTRTRRLT ADYLWPDLTK SGSKKRSGKR YSKPVIDLDD DFEADFQEFK 60 DEETDADDFD DVDDVLADVK PFALSATKKP ASAASGGSNS VKSVEFNGQA EKSAKRKRKN 120 QYRGIRQRPW GKWAAEIRDP RKGVRVWLGT FNTAEEAARA YDAEARRIRG KKAKVNFPDE 180 APRTSPKRAV KANSQKSLSR SNLSPVQPNL DQNFNYLSKP EQDYFDTMGF VEEKPPMDQF 240 AYVDPPHVSE DVGLKPFAQS DNASLYFNSD QGSNSFDCSD FGWGEQGAKT PEISSILEAS 300 IESDEFVEDA NPKKKLKPSS DNVTPIEDNS AKSLSDELLA LDNQMKYFQM PFIEGNWDAS 360 IDAFLNGDAT QDGGNPMDLW SFDDFPAMAE GVF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 120 | 180 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007024747.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12 | ||||
Refseq | XP_017979011.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12 | ||||
Swissprot | Q9SSA8 | 3e-95 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A061GJV1 | 0.0 | A0A061GJV1_THECC; Transcription factor JERF1, putative isoform 1 | ||||
STRING | EOY27369 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 5e-86 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG029232t3 |
Entrez Gene | 18596297 |