PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB

Protein Properties

Length: 299aa MW: 34166.3 Da PI: 6.7588

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029121t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	7.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed +l+d++k +G g+W+ +++ g++R++k+c++rw++yl Thecc1EG029121t1 14 RGAWTAMEDRILKDYIKIHGEGQWRNLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	51.6	2.1e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ Thecc1EG029121t1 67 RGNITRDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7899****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.9E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.852	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.03E-27	12	108	IPR009057	Homeodomain-like
SMART	SM00717	4.8E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	8.57E-11	16	61	No hit	No description
PROSITE profile	PS51294	25.024	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-24	65	116	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-14	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	1.59E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006633	Biological Process	fatty acid biosynthetic process
GO:0006970	Biological Process	response to osmotic stress
GO:0010023	Biological Process	proanthocyanidin biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MGRSPCCSKE GLNRGAWTAM EDRILKDYIK IHGEGQWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TRDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKLQDKQ 120 SRSLSNRKPS NRSQQKANPT IETSARLPSE AKLTSCVIRT KATRCTKVFI NVPEPQLEDT 180 YKPSVLRPFP LPEEPESSEF VPKEDNDPSN LMIDLEVDEN FLSEFLNSEF SQLQPSHFQN 240 KGDSYSNSDT CDPGQYSSTN SDQSLFLSND MMQDADFTSM ASLMESELDW LQDQADPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-25	12	116	5	108	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007024611.1	0.0	PREDICTED: transcription factor TT2
TrEMBL	A0A061GCW5	0.0	A0A061GCW5_THECC; Duplicated homeodomain-like superfamily protein, putative
STRING	EOY27233	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	5e-64	MYB family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG029121t1
Entrez Gene	18596211

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]