PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029115t2
Common NameTCM_029115
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 604aa    MW: 65916.3 Da    PI: 8.2228
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029115t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-09489537348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       +WT  E  +lvd+v+++G g+W+ I r        Rt  ++k++w+++l
  Thecc1EG029115t2 489 AWTLSEVMKLVDGVAKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 537
                       7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.225482541IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-13483544IPR009057Homeodomain-like
SMARTSM007179.9E-10486539IPR001005SANT/Myb domain
SuperFamilySSF466892.24E-16488547IPR009057Homeodomain-like
CDDcd116603.67E-19488538No hitNo description
PfamPF002493.5E-7489537IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
METVVLVEGS NEGKFEETGL EKNNSALSSP KHVADPVVYK LVRVEGDGRL VPATDDELME  60
VEGLLENEKR EIHIVADTGQ ALGCTSNEVS SSGIQLESSE GLSQSENTEA DAEKLSARLE  120
ETVLSGTQCM SDNHVTQSGS VGERSKPLDE LIEGGSSTSA GCISSKPDFS KLKGEICLDN  180
LSIKELHEVF KATFGRDTTV KDKQWLKRRI AMGLTNSCDV STTTFVIKDN KLVKKVKEDS  240
CNNVDGATSE DHPVVGVENH EDLLNSLSSQ IDEHQTTSGM RLGSNSHENT YSEDLAAEQR  300
AAKRVRKPTR RYIEELSKEE SKEYSGRLIP SAKNIGIRPM ALKSHARPAR NGSLDGRTII  360
TRLDSLGGSG IQVPCVYRVR RSRPRKNVMA LLKFHPSGMG MTTTFVKKGL DVHSSQMDNG  420
SGNKVLEARS TPEQTLQQFV AEPKKEKPAA ELGQHMGLKH VNLSGDSSDD NVVTVPTAKG  480
GTRRKHHRAW TLSEVMKLVD GVAKYGAGRW SEIKRLAFAS YSYRTSVDLK DKWRNLLKAS  540
FAQTPVDKGV NSRKHPSMPI PAPILLRVRE LAEIQSQVPP NLSASKLAAC GGRSVNETRS  600
GYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379385RRSRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024601.20.0PREDICTED: uncharacterized protein LOC18596205 isoform X2
TrEMBLA0A061GCV60.0A0A061GCV6_THECC; TRF-like 3, putative isoform 2
STRINGEOY272220.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-128TRF-like 6
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]