PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 1272aa MW: 140740 Da PI: 7.7763

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029045t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4.1e-05	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Thecc1EG029045t1 88 FVCEICNKGFQRDQNLQLHRRGH 110 89******************988 PP
2	zf-C2H2	11.3	0.0011	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Thecc1EG029045t1 164 WKCDKCSKRYAVQSDWKAHSKTC 186 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.8E-5	87	110	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.63E-6	87	110	No hit	No description
PROSITE profile	PS50157	10.949	88	110	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	88	110	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	90	110	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	129	159	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.4E-4	152	185	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.63E-6	159	184	No hit	No description
SMART	SM00355	140	164	184	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.20.20.80	1.1E-114	631	968	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	8.75E-97	634	966	IPR017853	Glycoside hydrolase superfamily
Pfam	PF01301	2.3E-114	640	964	IPR031330	Glycoside hydrolase 35, catalytic domain
PRINTS	PR00742	1.3E-43	643	660	IPR001944	Glycoside hydrolase, family 35
PRINTS	PR00742	1.3E-43	664	682	IPR001944	Glycoside hydrolase, family 35
PRINTS	PR00742	1.3E-43	719	738	IPR001944	Glycoside hydrolase, family 35
PRINTS	PR00742	1.3E-43	775	790	IPR001944	Glycoside hydrolase, family 35
PROSITE pattern	PS01182	0	777	789	IPR019801	Glycoside hydrolase, family 35, conserved site
PRINTS	PR00742	1.3E-43	868	883	IPR001944	Glycoside hydrolase, family 35
PRINTS	PR00742	1.3E-43	933	949	IPR001944	Glycoside hydrolase, family 35
SuperFamily	SSF49785	7.23E-33	1094	1135	IPR008979	Galactose-binding domain-like
Gene3D	G3DSA:2.60.120.260	6.0E-34	1097	1253	IPR008979	Galactose-binding domain-like
SuperFamily	SSF49785	7.23E-33	1168	1263	IPR008979	Galactose-binding domain-like
Pfam	PF13364	8.9E-6	1169	1239	IPR025300	Beta-galactosidase jelly roll domain
PRINTS	PR00742	1.3E-43	1200	1216	IPR001944	Glycoside hydrolase, family 35

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0016021	Cellular Component	integral component of membrane
GO:0003676	Molecular Function	nucleic acid binding
GO:0004565	Molecular Function	beta-galactosidase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1272 aa Download sequence Send to blast
MMKGLLFHDQ QQQVLEENMS NLTSASGEAS VSSGNRAEAA TNYPQQYFST PPPETQPAKK 60 KRNLPGNPDP DAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT 120 SKEVRKKVYV CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK 180 AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RAITGANPLL SSHQPGASAS 240 HINLQVPQFN AQDIQAFSLK KEQQSFSLRP EIPPWLSSQP MLGAGPGPPP QPIDLSSSSS 300 SIFSARLDHH HQEFTQTTHH QDLTHHVNPN PNPTSLGPTL PAYHPTTVPS PHMSATALLQ 360 KAAQMGATMS SKTGSSSAPA TAAAASLIRP HQQAHVSADS AGSNNNTTTA VFGLNLSSRE 420 ELAVIMLAQT KDGRFINETF SSTTTTPTTT TNAAAAARND HETGGIQGEG LTRDFLGLRA 480 FSHSDILNLA GLSNCMNTSH EQRNQSQKPW QVVDSPKFEA VHIALLAAPS AGTGSGYFYL 540 PGTTDSLKAE EMNHSKKLAA TESTSKSTAA MARKRSSKTT LIFFVLLSIV AFVAFVPVFA 600 SLPSLSSHSH DLHLHLRLHQ RQHRLEKSDA RKFEIAEDMF WKDGKPFQII GGDLHYFRIL 660 PEYWEDRLLR AKALGLNTIQ TYIPWNLHEP EPGKLVFEGI ADLVSFLKLC QKLGLLVMLR 720 AGPYICAEWD LGGFPAWLLA IEPDIRLRSS DPAYLQLVEG WWGVLLPKVA PLLYGNGGPI 780 IMVQIENEFG SYGDDKAYLR HLVKLARGHL GEDIILYTTD GGSRETLEKG TLVGDDVFSA 840 VDFTTGDDPW PIFELQKEFN SPGKSPPLSS EFYTGWLTHW GEKIARTDAD FTAAALEKIL 900 SRNGSVVLYM AHGGTNFGFY NGANTGADES DYKPDLTSYD YDAPITESGD VDNAKFKAIR 960 RVVGKYSSVS LPSFPSSNKK TGYGFIQLQK TRSLFDLLDG FDSAHIVEAE NPTAMEYFYQ 1020 MFGFLLYVSE YASKAGGNKL FIPKVHDRAQ VFISCPSRAD GGRVSYVGTI ERWSNQAIYL 1080 PNAKCVSNTS LFILVENMGR VNYGPYLFDR KGILSSVYVD GRVLNRWKMI PIPFQNLNEV 1140 PKFNPVIQVA SEFPKVSIRK KLEHKSEDVL EGPSFYTGHF SIDKTSEVTD TFISFRAWGK 1200 GIAFVNEFNI GRYWPTSGPQ CNLYIPAPIL RHGENVLVIF ELESPNPELV VDSVDQQDFN 1260 CGSSKASVRQ L*

Sequence ? help Back to Top

Protein Sequence Length: 1272 aa Download sequence Send to blast

MMKGLLFHDQ QQQVLEENMS NLTSASGEAS VSSGNRAEAA TNYPQQYFST PPPETQPAKK  60
KRNLPGNPDP DAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT  120
SKEVRKKVYV CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK  180
AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RAITGANPLL SSHQPGASAS  240
HINLQVPQFN AQDIQAFSLK KEQQSFSLRP EIPPWLSSQP MLGAGPGPPP QPIDLSSSSS  300
SIFSARLDHH HQEFTQTTHH QDLTHHVNPN PNPTSLGPTL PAYHPTTVPS PHMSATALLQ  360
KAAQMGATMS SKTGSSSAPA TAAAASLIRP HQQAHVSADS AGSNNNTTTA VFGLNLSSRE  420
ELAVIMLAQT KDGRFINETF SSTTTTPTTT TNAAAAARND HETGGIQGEG LTRDFLGLRA  480
FSHSDILNLA GLSNCMNTSH EQRNQSQKPW QVVDSPKFEA VHIALLAAPS AGTGSGYFYL  540
PGTTDSLKAE EMNHSKKLAA TESTSKSTAA MARKRSSKTT LIFFVLLSIV AFVAFVPVFA  600
SLPSLSSHSH DLHLHLRLHQ RQHRLEKSDA RKFEIAEDMF WKDGKPFQII GGDLHYFRIL  660
PEYWEDRLLR AKALGLNTIQ TYIPWNLHEP EPGKLVFEGI ADLVSFLKLC QKLGLLVMLR  720
AGPYICAEWD LGGFPAWLLA IEPDIRLRSS DPAYLQLVEG WWGVLLPKVA PLLYGNGGPI  780
IMVQIENEFG SYGDDKAYLR HLVKLARGHL GEDIILYTTD GGSRETLEKG TLVGDDVFSA  840
VDFTTGDDPW PIFELQKEFN SPGKSPPLSS EFYTGWLTHW GEKIARTDAD FTAAALEKIL  900
SRNGSVVLYM AHGGTNFGFY NGANTGADES DYKPDLTSYD YDAPITESGD VDNAKFKAIR  960
RVVGKYSSVS LPSFPSSNKK TGYGFIQLQK TRSLFDLLDG FDSAHIVEAE NPTAMEYFYQ  1020
MFGFLLYVSE YASKAGGNKL FIPKVHDRAQ VFISCPSRAD GGRVSYVGTI ERWSNQAIYL  1080
PNAKCVSNTS LFILVENMGR VNYGPYLFDR KGILSSVYVD GRVLNRWKMI PIPFQNLNEV  1140
PKFNPVIQVA SEFPKVSIRK KLEHKSEDVL EGPSFYTGHF SIDKTSEVTD TFISFRAWGK  1200
GIAFVNEFNI GRYWPTSGPQ CNLYIPAPIL RHGENVLVIF ELESPNPELV VDSVDQQDFN  1260
CGSSKASVRQ L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4mad_A	1e-147	637	1242	21	578	Beta-galactosidase
4mad_B	1e-147	637	1242	21	578	Beta-galactosidase
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	126	KLKQRTSKEVRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM465183	1e-138	AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017978893.1	0.0	PREDICTED: beta-galactosidase 17
Swissprot	Q93Z24	0.0	BGA17_ARATH; Beta-galactosidase 17
TrEMBL	A0A061GB64	0.0	A0A061GB64_THECC; Beta-galactosidase
STRING	EOY27120	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8077	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-116	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	Thecc1EG029045t1
Entrez Gene	18596143

Publications ? help Back to Top
Iglesias N, et al. Apoplastic glycosidases active against xyloglucan oligosaccharides of Arabidopsis thaliana. Plant Cell Physiol., 2006. 47(1): p. 55-63 [PMID:16267099] Ahn YO, et al. Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 35. Phytochemistry, 2007. 68(11): p. 1510-20 [PMID:17466346] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Chandrasekar B,van der Hoorn RA Beta galactosidases in Arabidopsis and tomato - a mini review. Biochem. Soc. Trans., 2016. 44(1): p. 150-8 [PMID:26862200]