PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 475aa MW: 52028.9 Da PI: 5.7654

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG028961t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.1	6.7e-08	380	420	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L Thecc1EG028961t2 380 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 420 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.332	371	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-14	376	435	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-13	377	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-11	379	429	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-5	380	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.28E-4	393	425	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MDGLGWDDSE VVANSLPVWN SQRNDIEDSF LMSNSNSSMY CGKMNLPEDI FNPIQELQKA 60 EPSRVNSDSD IVREMVQQQV SELDSVNVAS NFNMLQRQGV RLAADTSLLK SANWGDALSQ 120 ELCSSAWMKR AYGLSTSNAS ISDIGMAVQS QVMKGLQNGK AGATTTGSLE AFNCLLSATN 180 SNTDTSVEDD GISMIFSDCK NLWNFAASSA VSSGESENNG SNTGSKDFNC PVNELDETLS 240 QSSSDRYFKN GKLSQTRPSS SKRGSDQSEF KVSLNCGYFN LLQTDSSATE GGFRLIPENP 300 PKAKKARTEK RPSSSNINFQ QPSSSVSSSI EEPDPEAIAQ MKEMIYRAAA FRPVSLGLEV 360 VEKPKRKNVR ISTDPQTVAA RQRRERISER IRVLQRLVPG GSKMDTASML DEAANYLKFL 420 RSQVKALENL GHKLDPVNCP PTNHAFSSLP FNHSLPMQTH FPLLNPNHIQ HPQS*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MDGLGWDDSE VVANSLPVWN SQRNDIEDSF LMSNSNSSMY CGKMNLPEDI FNPIQELQKA  60
EPSRVNSDSD IVREMVQQQV SELDSVNVAS NFNMLQRQGV RLAADTSLLK SANWGDALSQ  120
ELCSSAWMKR AYGLSTSNAS ISDIGMAVQS QVMKGLQNGK AGATTTGSLE AFNCLLSATN  180
SNTDTSVEDD GISMIFSDCK NLWNFAASSA VSSGESENNG SNTGSKDFNC PVNELDETLS  240
QSSSDRYFKN GKLSQTRPSS SKRGSDQSEF KVSLNCGYFN LLQTDSSATE GGFRLIPENP  300
PKAKKARTEK RPSSSNINFQ QPSSSVSSSI EEPDPEAIAQ MKEMIYRAAA FRPVSLGLEV  360
VEKPKRKNVR ISTDPQTVAA RQRRERISER IRVLQRLVPG GSKMDTASML DEAANYLKFL  420
RSQVKALENL GHKLDPVNCP PTNHAFSSLP FNHSLPMQTH FPLLNPNHIQ HPQS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	380	385	RQRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007024383.2	0.0	PREDICTED: transcription factor bHLH87
TrEMBL	A0A061GAT2	0.0	A0A061GAT2_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2
STRING	EOY27004	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-76	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG028961t2
Entrez Gene	18596069

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]