PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG028961t1
Common NameTCM_028961
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 517aa    MW: 56666.3 Da    PI: 6.5236
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG028961t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.5e-08380420954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Thecc1EG028961t1 380 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 420
                       69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332371420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-14376435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-13377426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-11379429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-5380420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-4393425No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MDGLGWDDSE VVANSLPVWN SQRNDIEDSF LMSNSNSSMY CGKMNLPEDI FNPIQELQKA  60
EPSRVNSDSD IVREMVQQQV SELDSVNVAS NFNMLQRQGV RLAADTSLLK SANWGDALSQ  120
ELCSSAWMKR AYGLSTSNAS ISDIGMAVQS QVMKGLQNGK AGATTTGSLE AFNCLLSATN  180
SNTDTSVEDD GISMIFSDCK NLWNFAASSA VSSGESENNG SNTGSKDFNC PVNELDETLS  240
QSSSDRYFKN GKLSQTRPSS SKRGSDQSEF KVSLNCGYFN LLQTDSSATE GGFRLIPENP  300
PKAKKARTEK RPSSSNINFQ QPSSSVSSSI EEPDPEAIAQ MKEMIYRAAA FRPVSLGLEV  360
VEKPKRKNVR ISTDPQTVAA RQRRERISER IRVLQRLVPG GSKMDTASML DEAANYLKFL  420
RSQVKALENL GHKLDPVNCP PTNHAFSSLP FNHSLPMQTH FPLLNPNHIQ HPQNNLLRKE  480
PRSLAGNFVF GLSFKLTTVQ SRCIGVDSYA ALRADL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380385RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024383.20.0PREDICTED: transcription factor bHLH87
TrEMBLA0A061GIV90.0A0A061GIV9_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOY270040.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.17e-76bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]