PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GATA

Protein Properties

Length: 321aa MW: 34938.5 Da PI: 6.5955

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG028861t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53.2	4.1e-17	213	247	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gp g+ktLCnaCG++y++ +l Thecc1EG028861t1 213 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 247 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	1.9E-81	20	299	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	4.7E-16	207	257	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.189	207	243	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	4.9E-14	208	245	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	6.18E-15	209	270	No hit	No description
CDD	cd00202	9.48E-13	212	259	No hit	No description
Pfam	PF00320	7.7E-15	213	247	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	213	238	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MEAADFFVGG YYGGAAGGDF SSEMRMSAEQ KLAENFTVDD LLDFSNEDAI ISDGFFDNVA 60 GNSTDSSTVT CNSSVSGGDN HFSSANFPHS SQFSGELCVP YDDLAELEWL SNFVEDSFST 120 DQNLQSNLQI LATSKSPTPE SSSSSTRIES LTRSPTNPIF QNDTPLPGKA RSKRSRAAPC 180 DWSTRLLHLT PKSTGQKKRD NPNANSESLG RKCLHCAAEK TPQWRTGPMG PKTLCNACGV 240 RYKSGRLVPE YRPASSPTFM STKHSNSHRK VVELRRQKDL QRAQQQQFLS QTSIFGISNG 300 GGGGDDFLIH HGGPDFRHMI *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007024273.2	0.0	PREDICTED: GATA transcription factor 12
Swissprot	O82632	2e-77	GATA9_ARATH; GATA transcription factor 9
TrEMBL	A0A061GAJ1	0.0	A0A061GAJ1_THECC; GATA transcription factor
STRING	EOY26895	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5682	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	9e-65	GATA transcription factor 9

Link Out ? help Back to Top
Phytozome	Thecc1EG028861t1
Entrez Gene	18596000

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]