PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG028851t1 | ||||||||
Common Name | TCM_028851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 26238.9 Da PI: 4.6715 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 7.8e-19 | 59 | 109 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Thecc1EG028851t1 59 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 109 68*****998.**********843...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.4E-13 | 59 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-36 | 60 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.354 | 60 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-32 | 60 | 118 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-21 | 60 | 118 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-10 | 61 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.91E-32 | 61 | 119 | No hit | No description |
PRINTS | PR00367 | 2.4E-10 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MTETNHSSSE VESCSSNNSN SSASSSSQTR QNLPRKSNPA QSPEDSRAKK PRDSSSKHPV 60 YRGVRMRSWG KWVSEIREPR KKSRIWLGTF PTPEMAARAH DVAALSIKGD SAILNFPELA 120 ELLPRPVSLM PRDIQAAAAK AASMVNFDTL SSSSSSSPES SSLSESNASE EPEELGEIVQ 180 LPNIEGNFDS LFDSRNEFIL LDSVDGWAYP PQDFYGGFCD QIWATENLIP GSFGTSMWE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 52 | 118 | 6 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155925 | 2e-37 | EF155925.1 Populus trichocarpa TINY-like protein (TINYL6) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007024262.1 | 1e-174 | PREDICTED: ethylene-responsive transcription factor TINY | ||||
Swissprot | Q39127 | 2e-61 | TINY_ARATH; Ethylene-responsive transcription factor TINY | ||||
TrEMBL | A0A061GIH9 | 1e-173 | A0A061GIH9_THECC; Integrase-type DNA-binding superfamily protein | ||||
STRING | EOY26884 | 1e-174 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 3e-59 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG028851t1 |
Entrez Gene | 18595991 |
Publications ? help Back to Top | |||
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