PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

CPP

Protein Properties

Length: 576aa MW: 63389.3 Da PI: 8.1871

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG028771t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	38.9	1.7e-12	125	162	4	42
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 k+C Ck+skClk+YCeCfa++++C+ C+C dC+N+ e+ Thecc1EG028771t1 125 KQCGCKQSKCLKLYCECFASREYCNG-CNCADCCNNVEN 162 89**********************.******9875 PP
2	TCR	52	1.4e-16	208	245	2	39
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +++gC+Ckks+Clk+YCeCf+a+++Cse+CkC dCkN Thecc1EG028771t1 208 HERGCHCKKSECLKRYCECFQANVFCSENCKCMDCKNF 245 889**********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.7E-10	122	162	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	33.806	123	247	IPR005172	CRC domain
Pfam	PF03638	5.1E-9	125	159	IPR005172	CRC domain
SMART	SM01114	3.0E-17	207	248	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	6.8E-13	210	245	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence Send to blast
MRQLEIENGD FPPKTIEVVT ATPCFPPKGI KSVERTRDSV KVTVKERSSP HFPPKKKLAR 60 QLIFTEFGLS PIITTSPPLP VVKPSSELHL SPRCAFSSIK SETPIPIPLP QANIKANSGT 120 PKGPKQCGCK QSKCLKLYCE CFASREYCNG CNCADCCNNV ENGDLRKAAA EIILERNPHA 180 FKPKIASTPC SPQNVGGDKE DTPPVGRHER GCHCKKSECL KRYCECFQAN VFCSENCKCM 240 DCKNFEVCKG TMAASGKDDS KSKICENSKG CEGRIAISPK DNGNRKFYRS FKGSEGLMAE 300 IGEDCIDTKI YTQRVTAATS NATGLSGQCL SQESRKRKHL ELHSNEKETL IESFSDFQKV 360 NNLKNSCPSA TLSVEPTCHI INSAMVGSFR HPYRLTLADV LHLEDTRKVC SGLAVLAEAA 420 KQFADKVGKA DVKDAAENKH GDALGAKEKD CQGGPAYFQK RVPDDLHLDG GATDAHEGRT 480 LPHGTVKLIC NEKHKQFMEP TSPKQILDRD IKNASAEQER CVLSSFRDFL EKLITFTNIK 540 DEAFLFPYWY LVHVTGTNEF SSARAVLMEK TGTEG*

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence Send to blast

MRQLEIENGD FPPKTIEVVT ATPCFPPKGI KSVERTRDSV KVTVKERSSP HFPPKKKLAR  60
QLIFTEFGLS PIITTSPPLP VVKPSSELHL SPRCAFSSIK SETPIPIPLP QANIKANSGT  120
PKGPKQCGCK QSKCLKLYCE CFASREYCNG CNCADCCNNV ENGDLRKAAA EIILERNPHA  180
FKPKIASTPC SPQNVGGDKE DTPPVGRHER GCHCKKSECL KRYCECFQAN VFCSENCKCM  240
DCKNFEVCKG TMAASGKDDS KSKICENSKG CEGRIAISPK DNGNRKFYRS FKGSEGLMAE  300
IGEDCIDTKI YTQRVTAATS NATGLSGQCL SQESRKRKHL ELHSNEKETL IESFSDFQKV  360
NNLKNSCPSA TLSVEPTCHI INSAMVGSFR HPYRLTLADV LHLEDTRKVC SGLAVLAEAA  420
KQFADKVGKA DVKDAAENKH GDALGAKEKD CQGGPAYFQK RVPDDLHLDG GATDAHEGRT  480
LPHGTVKLIC NEKHKQFMEP TSPKQILDRD IKNASAEQER CVLSSFRDFL EKLITFTNIK  540
DEAFLFPYWY LVHVTGTNEF SSARAVLMEK TGTEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-21	125	246	12	122	Protein lin-54 homolog
5fd3_B	1e-21	125	246	12	122	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017978183.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBL	A0A061GAC5	0.0	A0A061GAC5_THECC; Tesmin/TSO1-like CXC domain-containing protein
STRING	EOY26815	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22196	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	2e-65	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Thecc1EG028771t1
Entrez Gene	18595952

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]