PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

CPP

Protein Properties

Length: 587aa MW: 65404.4 Da PI: 4.8979

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG028353t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.7	3e-15	277	315	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k+CnC+ s+Clk+YCeCfaag +C ++C Ce+C N+++ Thecc1EG028353t2 277 FKRCNCQMSRCLKLYCECFAAGLYCVDSCACENCYNRTD 315 699*********************************875 PP
2	TCR	47.2	4.4e-15	362	401	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gC+Ck+skClkkYCeC+ a++ Cs C+Ce+C N+ Thecc1EG028353t2 362 RHKRGCKCKRSKCLKKYCECYRAKVGCSGGCRCEGCDNSF 401 589***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.4E-12	275	316	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	32.371	276	402	IPR005172	CRC domain
Pfam	PF03638	3.0E-11	278	313	IPR005172	CRC domain
SMART	SM01114	5.9E-14	362	403	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	6.3E-11	364	400	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MEMPLRRSLL PHYEEIAAST SNAHGQLYSP SSSALIPCIQ KQFQSCNPSE CVDDFLADPL 60 EVDSAQHAET FLQSANVVPL LLPSCFTASQ VTTKNDDYTN DWVVEVGAQT LPHLSKKHLL 120 SGSLILLEGS GDQSIDESFD KILKFSSENI CNYVEPDELL EHQEASQHQR GIRRHLRFEA 180 TLDCKDNAAF NCHTSSRVRE VVDHVDSDHQ SSEAVVVDNE GHLPDNIEPP WDTQQVSCFD 240 QQTLPCGGQR VEVLSQYAES SKGKRNRETY TYESGDFKRC NCQMSRCLKL YCECFAAGLY 300 CVDSCACENC YNRTDYEDWV EDSREQIELR NPLAFAPTIV EQANDSPILA DDGNWTTPSS 360 ARHKRGCKCK RSKCLKKYCE CYRAKVGCSG GCRCEGCDNS FGKKSESIFQ REEEWKNLLN 420 MEELMSDQKG GTANQFSPTW EELGNTSHLT PLSHQVPSLI LSKIWDFPYI SQAQPQDGSG 480 LQLSPGQLHW YSSALASVNA PCEIMGDGSP HIHNDNSNPA NKLQSGSPNQ ERVFPPQQIQ 540 SDRLGSSSTA GLQSGRKLSS QAVSSFPPLS PHRNSKDRMN QIEDEQ*

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MEMPLRRSLL PHYEEIAAST SNAHGQLYSP SSSALIPCIQ KQFQSCNPSE CVDDFLADPL  60
EVDSAQHAET FLQSANVVPL LLPSCFTASQ VTTKNDDYTN DWVVEVGAQT LPHLSKKHLL  120
SGSLILLEGS GDQSIDESFD KILKFSSENI CNYVEPDELL EHQEASQHQR GIRRHLRFEA  180
TLDCKDNAAF NCHTSSRVRE VVDHVDSDHQ SSEAVVVDNE GHLPDNIEPP WDTQQVSCFD  240
QQTLPCGGQR VEVLSQYAES SKGKRNRETY TYESGDFKRC NCQMSRCLKL YCECFAAGLY  300
CVDSCACENC YNRTDYEDWV EDSREQIELR NPLAFAPTIV EQANDSPILA DDGNWTTPSS  360
ARHKRGCKCK RSKCLKKYCE CYRAKVGCSG GCRCEGCDNS FGKKSESIFQ REEEWKNLLN  420
MEELMSDQKG GTANQFSPTW EELGNTSHLT PLSHQVPSLI LSKIWDFPYI SQAQPQDGSG  480
LQLSPGQLHW YSSALASVNA PCEIMGDGSP HIHNDNSNPA NKLQSGSPNQ ERVFPPQQIQ  540
SDRLGSSSTA GLQSGRKLSS QAVSSFPPLS PHRNSKDRMN QIEDEQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	8e-16	278	421	12	133	Protein lin-54 homolog
5fd3_B	8e-16	278	421	12	133	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007023934.2	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBL	A0A061GAF8	0.0	A0A061GAF8_THECC; Tesmin/TSO1-like CXC domain-containing protein isoform 2
STRING	EOY26555	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	4e-56	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Thecc1EG028353t2
Entrez Gene	18595773

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]