PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

CPP

Protein Properties

Length: 647aa MW: 71573.1 Da PI: 4.7394

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG028353t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.6	3.4e-15	337	375	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k+CnC+ s+Clk+YCeCfaag +C ++C Ce+C N+++ Thecc1EG028353t1 337 FKRCNCQMSRCLKLYCECFAAGLYCVDSCACENCYNRTD 375 699*********************************875 PP
2	TCR	47	5e-15	422	461	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gC+Ck+skClkkYCeC+ a++ Cs C+Ce+C N+ Thecc1EG028353t1 422 RHKRGCKCKRSKCLKKYCECYRAKVGCSGGCRCEGCDNSF 461 589***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.4E-12	335	376	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	32.371	336	462	IPR005172	CRC domain
Pfam	PF03638	3.4E-11	338	373	IPR005172	CRC domain
SMART	SM01114	5.9E-14	422	463	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	7.1E-11	424	460	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence Send to blast
MESPKSDGNA VEAFPASALK SPFSKFLNNL SPIESANAAR YIERLSESSL PTTPSVFGSP 60 HLDLQPETGF LESEEIAAST SNAHGQLYSP SSSALIPCIQ KQFQSCNPSE CVDDFLADPL 120 EVDSAQHAET FLQSANVVPL LLPSCFTASQ VTTKNDDYTN DWVVEVGAQT LPHLSKKHLL 180 SGSLILLEGS GDQSIDESFD KILKFSSENI CNYVEPDELL EHQEASQHQR GIRRHLRFEA 240 TLDCKDNAAF NCHTSSRVRE VVDHVDSDHQ SSEAVVVDNE GHLPDNIEPP WDTQQVSCFD 300 QQTLPCGGQR VEVLSQYAES SKGKRNRETY TYESGDFKRC NCQMSRCLKL YCECFAAGLY 360 CVDSCACENC YNRTDYEDWV EDSREQIELR NPLAFAPTIV EQANDSPILA DDGNWTTPSS 420 ARHKRGCKCK RSKCLKKYCE CYRAKVGCSG GCRCEGCDNS FGKKSESIFQ REEEWKNLLN 480 MEELMSDQKG GTANQFSPTW EELGNTSHLT PLSHQVPSLI LSKIWDFPYI SQAQPQDGSG 540 LQLSPGQLHW YSSALASVNA PCEIMGDGSP HIHNDNSNPA NKLQSGSPNQ ERVFPPQQIQ 600 SDRLGSSSTA GLQSGRKLSS QAVSSFPPLS PHRNSKDRMN QIEDEQ*

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence Send to blast

MESPKSDGNA VEAFPASALK SPFSKFLNNL SPIESANAAR YIERLSESSL PTTPSVFGSP  60
HLDLQPETGF LESEEIAAST SNAHGQLYSP SSSALIPCIQ KQFQSCNPSE CVDDFLADPL  120
EVDSAQHAET FLQSANVVPL LLPSCFTASQ VTTKNDDYTN DWVVEVGAQT LPHLSKKHLL  180
SGSLILLEGS GDQSIDESFD KILKFSSENI CNYVEPDELL EHQEASQHQR GIRRHLRFEA  240
TLDCKDNAAF NCHTSSRVRE VVDHVDSDHQ SSEAVVVDNE GHLPDNIEPP WDTQQVSCFD  300
QQTLPCGGQR VEVLSQYAES SKGKRNRETY TYESGDFKRC NCQMSRCLKL YCECFAAGLY  360
CVDSCACENC YNRTDYEDWV EDSREQIELR NPLAFAPTIV EQANDSPILA DDGNWTTPSS  420
ARHKRGCKCK RSKCLKKYCE CYRAKVGCSG GCRCEGCDNS FGKKSESIFQ REEEWKNLLN  480
MEELMSDQKG GTANQFSPTW EELGNTSHLT PLSHQVPSLI LSKIWDFPYI SQAQPQDGSG  540
LQLSPGQLHW YSSALASVNA PCEIMGDGSP HIHNDNSNPA NKLQSGSPNQ ERVFPPQQIQ  600
SDRLGSSSTA GLQSGRKLSS QAVSSFPPLS PHRNSKDRMN QIEDEQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-15	338	481	12	133	Protein lin-54 homolog
5fd3_B	1e-15	338	481	12	133	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021298702.1	0.0	protein tesmin/TSO1-like CXC 3
TrEMBL	A0A061G9J5	0.0	A0A061G9J5_THECC; Tesmin/TSO1-like CXC domain-containing protein isoform 1
STRING	EOY26555	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15696	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	6e-56	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Thecc1EG028353t1
Entrez Gene	18595773

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]