PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG028312t2 | ||||||||
Common Name | TCM_028312 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 194aa MW: 21684.8 Da PI: 8.4871 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.2e-06 | 87 | 109 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lCr f + C+yG+rC+F H+ Thecc1EG028312t2 87 KLCRMFCNGRNCSYGGRCRFLHV 109 6888888889************6 PP | |||||||
2 | zf-CCCH | 36.1 | 1.1e-11 | 160 | 186 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+++ tG C yG C++aHg+ Thecc1EG028312t2 160 WKTKLCNNWKMTGGCAYGKACCYAHGE 186 8************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.948 | 83 | 111 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0061 | 84 | 110 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.1E-5 | 86 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 87 | 108 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-13 | 154 | 188 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-9 | 157 | 190 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 159 | 186 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.507 | 159 | 187 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-9 | 160 | 186 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MLSNYNMNIS RDANEPMLQW WPQHPIQGKD IETSCLIEYP SFKKRRICEN FFANPSILVA 60 MEEVASGSFK ARQCGPKWKE FADDSKKLCR MFCNGRNCSY GGRCRFLHVI PDKFRDISMI 120 NIVPGAGPVS QNRGSGELDC KGSVGSLSVG NEGVPKQASW KTKLCNNWKM TGGCAYGKAC 180 CYAHGETEAS WPFC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021298645.1 | 1e-122 | mRNA decay factor CTH2-like isoform X1 | ||||
TrEMBL | A0A061GAS1 | 1e-143 | A0A061GAS1_THECC; Uncharacterized protein isoform 2 (Fragment) | ||||
STRING | EOY26522 | 1e-139 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 2e-16 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG028312t2 |
Entrez Gene | 18595753 |
Publications ? help Back to Top | |||
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