PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GATA

Protein Properties

Length: 309aa MW: 33850.5 Da PI: 7.1019

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG027858t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51	1.9e-16	230	266	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ kg+ Thecc1EG027858t1 230 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 266 ***99999**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	6.1E-12	87	122	IPR010399	Tify domain
PROSITE profile	PS51320	15.04	87	122	IPR010399	Tify domain
Pfam	PF06200	6.3E-13	91	121	IPR010399	Tify domain
Pfam	PF06203	3.6E-16	154	196	IPR010402	CCT domain
PROSITE profile	PS51017	13.245	154	196	IPR010402	CCT domain
PROSITE profile	PS50114	8.972	224	272	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.2E-13	224	277	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.18E-13	225	284	No hit	No description
Gene3D	G3DSA:3.30.50.10	6.8E-16	228	271	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.21E-14	229	272	No hit	No description
PROSITE pattern	PS00344	0	230	257	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.1E-14	230	266	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MDGIHGKNGR MHMGNDVQQP MHHHVHYEHH HHIMNGNGMV DDDDVHHAHH HHHHHDVDDN 60 VGCGEAEGVE AGDLPSDHPG VLSDNQGPDN GDQLTLSFQG QVYVYDSVPP EKVQAVLLLL 120 GGREVPPTMP AIPITTQNNR GLPGTPQRFS VPQRLASLLR FREKRKERNF DKKIRYTVRK 180 EVALRMQRNK GQFTSSKPNT DDSVSAASSL GSNQSWGADG NGSQNQEIVC RHCGISEKST 240 PMMRRGPEGP RTLCNACGLM WANKGTLRDL SKAAPQTGNS SSLSKNGENV NFEADQVVRI 300 TENVSGSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00198	DAP	Transfer from AT1G51600	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU194352	1e-36	EU194352.1 Corchorus capsularis cultivar JRC-412 SCAR marker SCS3 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007023733.2	0.0	PREDICTED: GATA transcription factor 28
Swissprot	Q8H1G0	1e-128	GAT28_ARATH; GATA transcription factor 28
TrEMBL	A0A061G916	0.0	A0A061G916_THECC; ZIM-like 1
STRING	EOY26355	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3684	26	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51600.2	1e-119	ZIM-LIKE 2

Link Out ? help Back to Top
Phytozome	Thecc1EG027858t1
Entrez Gene	18595627

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]