PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 483aa MW: 52779.8 Da PI: 6.1746

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG027630t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.7	5.5e-33	257	311	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl Thecc1EG027630t2 257 KPRMRWTPELHECFVEAVSKLDGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 311 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.456	254	314	IPR017930	Myb domain
SuperFamily	SSF46689	8.96E-18	255	311	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-31	256	312	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-25	257	312	IPR006447	Myb domain, plants
Pfam	PF00249	4.0E-9	259	310	IPR001005	SANT/Myb domain
Pfam	PF14379	2.4E-22	348	394	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MKVGMSSKTM NHPSYISVTQ SEPSKGIGES HHTAASPIHN FLSIGSEGQS SLAGECSSPH 60 PFPFIRTESF KNNLKSGPSS PISPSSHAKS AFSRSSVFCT SLYLSSSSTS ETQRQLGNLP 120 FLPHPPTCGQ SISAVDSSKS PVVFSEDLHN PYNEDHSEII MKDFLNFPGD DCDGNFHGLH 180 CESNNFTLTE QLELQFLSDE LDIAIADHGE NPRLDEIYET PQKLNVAFTC NQNSASVVPS 240 TDACSSIRLS GPAAVHKPRM RWTPELHECF VEAVSKLDGP EKATPKGVLK LMNVEGLTIY 300 HVKSHLQKYR LAKYMPEKKE EKKTSSSEEK KAALSGNESD GKKKGGTHIT EALRMQMEVQ 360 KQLHEQLELQ RSLQLRIEEH ARYLQKILEE QQKAGSALLP SLSMSTPTDP SQNSELQPSS 420 SSAIASPTQP SESKTELSSS LPSKHKAPEV NDCEPESSPK KLRTENKPES AADEAVVENP 480 AQ*

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MKVGMSSKTM NHPSYISVTQ SEPSKGIGES HHTAASPIHN FLSIGSEGQS SLAGECSSPH  60
PFPFIRTESF KNNLKSGPSS PISPSSHAKS AFSRSSVFCT SLYLSSSSTS ETQRQLGNLP  120
FLPHPPTCGQ SISAVDSSKS PVVFSEDLHN PYNEDHSEII MKDFLNFPGD DCDGNFHGLH  180
CESNNFTLTE QLELQFLSDE LDIAIADHGE NPRLDEIYET PQKLNVAFTC NQNSASVVPS  240
TDACSSIRLS GPAAVHKPRM RWTPELHECF VEAVSKLDGP EKATPKGVLK LMNVEGLTIY  300
HVKSHLQKYR LAKYMPEKKE EKKTSSSEEK KAALSGNESD GKKKGGTHIT EALRMQMEVQ  360
KQLHEQLELQ RSLQLRIEEH ARYLQKILEE QQKAGSALLP SLSMSTPTDP SQNSELQPSS  420
SSAIASPTQP SESKTELSSS LPSKHKAPEV NDCEPESSPK KLRTENKPES AADEAVVENP  480
AQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-26	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-26	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-26	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-26	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-26	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-26	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-26	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-26	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007023582.2	0.0	PREDICTED: myb family transcription factor PHL6
Refseq	XP_017979295.1	0.0	PREDICTED: myb family transcription factor PHL6
Swissprot	Q949U2	1e-143	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A061G9Y2	0.0	A0A061G9Y2_THECC; Transcription factor, putative isoform 1
STRING	EOY26203	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-104	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG027630t2
Entrez Gene	18595528

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]