PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG027271t1

Common Name

TCM_027271

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 671aa MW: 77738.7 Da PI: 8.1387

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG027271t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.9	6.1e-22	63	146	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+++++ +++++w+v ++ leHnH l Thecc1EG027271t1 63 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRVMDSKRWRVLEVTLEHNHLL 146 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-19	63	146	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-30	265	359	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.693	552	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-5	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MEEEEASLSN DQLPEGKCNG EALKERDSGP TELDGQNGLP EGKKEFVAPA VGMEFESYDD 60 AYNYYNCYAK EVGFRVRVKN SWFKRNSREK YGAVLCCSSQ GFKRIKDVNR LRKETRTGCP 120 AMIRMRVMDS KRWRVLEVTL EHNHLLGAKI YKSIKKMGSG TKRKLQSSSD AEVRTIKLYR 180 ALVIDAGVNG NPNSNAREVR NFSEHPNQLN LRKGDSQAIY NYLCRLQLTN PNFFYLMDLN 240 DEGHLRNVFW VDSHCRASCG YFGDVIYIDN TCLSNRYETP LVALVGINHH GQTVLLGCGL 300 LAGETSECYT WLFKAWLTCM SGQCPQTIIT DRCKALQNAI AEVFPKSNHR FSLLHIMKKV 360 PEKLGGLRNY DAIRKTFVKA VYETLKVIEF EAAWGFMVQR FGITDHEWLR SLYEDRDRWA 420 PVYLKDIFFA GMSSSRPGEN VSPFFEKYVH KQTPVKEFLD KYELALQKKH KEETLADIES 480 RNSSPTLRTR CSFELQLSKL YTREIFKRFQ FEVEEMYSCF STTQLHVDGP IIIFLVKERV 540 LGEGNRREIR DYEVLYNRTA SEVRCICSCF NFCGYLCRHA LCVLNFNGVE EIPSKYILSR 600 WKKDYKRLYV PDQGFNNVDV VDRIQWFNQL YRSALQVVEE GAISLDHYKV ALQAFEESLN 660 RVHEVEEKQE *

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MEEEEASLSN DQLPEGKCNG EALKERDSGP TELDGQNGLP EGKKEFVAPA VGMEFESYDD  60
AYNYYNCYAK EVGFRVRVKN SWFKRNSREK YGAVLCCSSQ GFKRIKDVNR LRKETRTGCP  120
AMIRMRVMDS KRWRVLEVTL EHNHLLGAKI YKSIKKMGSG TKRKLQSSSD AEVRTIKLYR  180
ALVIDAGVNG NPNSNAREVR NFSEHPNQLN LRKGDSQAIY NYLCRLQLTN PNFFYLMDLN  240
DEGHLRNVFW VDSHCRASCG YFGDVIYIDN TCLSNRYETP LVALVGINHH GQTVLLGCGL  300
LAGETSECYT WLFKAWLTCM SGQCPQTIIT DRCKALQNAI AEVFPKSNHR FSLLHIMKKV  360
PEKLGGLRNY DAIRKTFVKA VYETLKVIEF EAAWGFMVQR FGITDHEWLR SLYEDRDRWA  420
PVYLKDIFFA GMSSSRPGEN VSPFFEKYVH KQTPVKEFLD KYELALQKKH KEETLADIES  480
RNSSPTLRTR CSFELQLSKL YTREIFKRFQ FEVEEMYSCF STTQLHVDGP IIIFLVKERV  540
LGEGNRREIR DYEVLYNRTA SEVRCICSCF NFCGYLCRHA LCVLNFNGVE EIPSKYILSR  600
WKKDYKRLYV PDQGFNNVDV VDRIQWFNQL YRSALQVVEE GAISLDHYKV ALQAFEESLN  660
RVHEVEEKQE *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007023280.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A061G9R9	0.0	A0A061G9R9_THECC; FAR1-related sequence 6 isoform 1
STRING	EOY25902	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Thecc1EG027271t1
Entrez Gene	18595324

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]