PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

M-type_MADS

Protein Properties

Length: 208aa MW: 23787.5 Da PI: 10.0255

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026845t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	57.2	2.1e-18	11	52	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+s r+ f kR +g+lKKA+ELS+LC++e++vii+s+ + Thecc1EG026845t1 11 IINDSARKAAFRKRTKGLLKKASELSTLCGIEACVIIYSPYN 52 7799***********************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.058	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.7E-23	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.39E-30	2	85	No hit	No description
SuperFamily	SSF55455	3.4E-24	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-10	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-17	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-10	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-10	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MTRKKVQLAY IINDSARKAA FRKRTKGLLK KASELSTLCG IEACVIIYSP YNAQPEVWPS 60 SAGAQRVLSE FKKMPKMDQS QKMMSQENFL RQRIAKANQQ LKRQCRDNRE KEITQVMFQC 120 LAEQGLENLN MMDLNDLEWL LEQNLKDIDK RIDMLTKASH SQGFATTSST TIAMPEVMLK 180 NGEKVQAESP NREVSLETVQ RQQLIRT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00553	DAP	Transfer from AT5G48670	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007031273.2	1e-150	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	3e-63	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A061F385	1e-152	A0A061F385_THECC; Agamous-like MADS-box protein A
STRING	EOY11775	1e-152	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-55	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Thecc1EG026845t1
Entrez Gene	18600642

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]