PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GATA

Protein Properties

Length: 193aa MW: 21173.4 Da PI: 10.362

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026732t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	61.4	1.1e-19	26	60	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++ Thecc1EG026732t1 26 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRR 60 ********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	5.23E-14	18	60	No hit	No description
SMART	SM00401	7.3E-16	20	71	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.505	20	56	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.8E-16	24	60	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.19E-13	25	75	No hit	No description
Pfam	PF00320	1.2E-17	26	60	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	26	51	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MGVMDLREKK SLSEVVMMSE NNKKFCTDCK TTKTPLWRGG PAGPKSLCNA CGIRYRKKRR 60 AMLGLNKGPE KKKERSQSSH SSSTTTTTSS ASVATTNVGD KKPSGQLNGL SESVKMRLYA 120 LGSEVFLQRS SSSSLLSGVV KKQRCQRRRK LGEEEQAAFS LMALSCGSVF FSPLFLSEMQ 180 MPFDLDYCSL EN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976332.1	3e-97	PREDICTED: GATA transcription factor 15
TrEMBL	A0A061F4J3	1e-137	A0A061F4J3_THECC; GATA transcription factor 15, putative
STRING	EOY11597	1e-138	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16911	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06740.1	2e-21	GATA transcription factor 15

Link Out ? help Back to Top
Phytozome	Thecc1EG026732t1
Entrez Gene	18600542

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]