PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB_related

Protein Properties

Length: 1170aa MW: 130484 Da PI: 9.4682

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026624t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.5	8.6e-10	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ Wk++a+ + +R+ +++ Thecc1EG026624t2 45 QWSKEEIERFYKAYREYGKD-WKKVAAAVH-NRSTEMV 80 6***************99.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.272	41	94	IPR017884	SANT domain
SuperFamily	SSF46689	1.27E-10	41	89	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-5	42	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-6	44	80	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-8	45	82	IPR001005	SANT/Myb domain
CDD	cd00167	4.62E-6	46	80	No hit	No description
SMART	SM01135	5.5E-58	654	755	IPR033471	DIRP domain
Pfam	PF06584	2.6E-32	654	754	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1170 aa Download sequence Send to blast
MAPTRKSKSV NKRYSSVYEV SPDKDAGNSS KNKPKKKLAD KLGSQWSKEE IERFYKAYRE 60 YGKDWKKVAA AVHNRSTEMV EALYLMNRAY LSLPDGTASV IGLIAMMTDH YSVLRGSDCE 120 RESNEPSEIP QKAQKRKRAK VHLGTSKEGV VQPQSIASSQ GCLSLLKRAG LNGIHPHAVR 180 KRTPRVPVSY SYRRNDTESY IPPNKRVKKS DADDNDAEHV AALTLTGALQ RGGSPQVSQT 240 PYKRAECRRS SPVQSYDRTS PQPETTKAKL DDSSYECWME GRPRGTEPVI GTHARDADPL 300 MDMEVVGTIE GHRKGKKFYR KKMKVEETKN NLSDDGGEAC SGTEERIRGS TLKGKVDMEI 360 TSAKSEQLSP WSQRKRSNKK LVFGDESSSI DALLTLANLS TSMLPTSIME SESSVKLKEN 420 RITLESVDKS SAPEAASTSH HRDNIKHLRP NEKVLDSITG AEEATTRKLK VGRNSAMDDN 480 VVSEAKQKPE PTNNSWKRKR KSFSSKLQIS NAEASMDSHL QQSFDNEDMG EEDNKYLTKG 540 KCGAQSSVQS RQWKSFRVSE DSSTNDDPKM AGIDSVVLTS QVPAPNPVSV PPKHQSRRKM 600 NLRRAFLSTD RSSSKCTLKN QPIKQSVTQD RLKEQLSSCL SSNLARRWCS FEWFYSAIDY 660 AWFAKREFVE YLNHVGLGHV PRLTRVEWGV IRSSLGKPRR FSERFLHEER EKLKHYRESV 720 RQHYSQLRVG AREGLPTDLA YPLSVGQQVI AIHPKTREAH DGKVLTVDHD RCRVQFDSPE 780 LGVEFVMDID CMPLNPLENM PEALRRQNLA FDKFSVTPKP SQVNSHSDFG GSTVFTSSGH 840 LENGTSPVNM SANQIKVDAN RNILHAEAAV PYVVSAHQAA YGQPLTMAHI KGRETDTRAM 900 SELNGALDKK EALLMELRNT NNDISENQNG ESCLKDSEPF KKHIATASSA LVNLRQRNAY 960 PANPLSPWQK PPTNSNFFGG LKSYVDSSLV SPESGSGVGE IVQGSRLKAH AMVDAAMKAM 1020 SSMKEGEDAF MRIGEALDSL DKRQFTYDIR MPVIKSREQE NGSMDYRNHL VSCTSKPVAA 1080 GWATNPKSQE ASDKNEEQGP SELIASCVAT LLMIQTCTER QYPPADVAQI IDSAVTSLHP 1140 CFPQNLPIYR EIQMCMGRIK TQILALIPT*

Sequence ? help Back to Top

Protein Sequence Length: 1170 aa Download sequence Send to blast

MAPTRKSKSV NKRYSSVYEV SPDKDAGNSS KNKPKKKLAD KLGSQWSKEE IERFYKAYRE  60
YGKDWKKVAA AVHNRSTEMV EALYLMNRAY LSLPDGTASV IGLIAMMTDH YSVLRGSDCE  120
RESNEPSEIP QKAQKRKRAK VHLGTSKEGV VQPQSIASSQ GCLSLLKRAG LNGIHPHAVR  180
KRTPRVPVSY SYRRNDTESY IPPNKRVKKS DADDNDAEHV AALTLTGALQ RGGSPQVSQT  240
PYKRAECRRS SPVQSYDRTS PQPETTKAKL DDSSYECWME GRPRGTEPVI GTHARDADPL  300
MDMEVVGTIE GHRKGKKFYR KKMKVEETKN NLSDDGGEAC SGTEERIRGS TLKGKVDMEI  360
TSAKSEQLSP WSQRKRSNKK LVFGDESSSI DALLTLANLS TSMLPTSIME SESSVKLKEN  420
RITLESVDKS SAPEAASTSH HRDNIKHLRP NEKVLDSITG AEEATTRKLK VGRNSAMDDN  480
VVSEAKQKPE PTNNSWKRKR KSFSSKLQIS NAEASMDSHL QQSFDNEDMG EEDNKYLTKG  540
KCGAQSSVQS RQWKSFRVSE DSSTNDDPKM AGIDSVVLTS QVPAPNPVSV PPKHQSRRKM  600
NLRRAFLSTD RSSSKCTLKN QPIKQSVTQD RLKEQLSSCL SSNLARRWCS FEWFYSAIDY  660
AWFAKREFVE YLNHVGLGHV PRLTRVEWGV IRSSLGKPRR FSERFLHEER EKLKHYRESV  720
RQHYSQLRVG AREGLPTDLA YPLSVGQQVI AIHPKTREAH DGKVLTVDHD RCRVQFDSPE  780
LGVEFVMDID CMPLNPLENM PEALRRQNLA FDKFSVTPKP SQVNSHSDFG GSTVFTSSGH  840
LENGTSPVNM SANQIKVDAN RNILHAEAAV PYVVSAHQAA YGQPLTMAHI KGRETDTRAM  900
SELNGALDKK EALLMELRNT NNDISENQNG ESCLKDSEPF KKHIATASSA LVNLRQRNAY  960
PANPLSPWQK PPTNSNFFGG LKSYVDSSLV SPESGSGVGE IVQGSRLKAH AMVDAAMKAM  1020
SSMKEGEDAF MRIGEALDSL DKRQFTYDIR MPVIKSREQE NGSMDYRNHL VSCTSKPVAA  1080
GWATNPKSQE ASDKNEEQGP SELIASCVAT LLMIQTCTER QYPPADVAQI IDSAVTSLHP  1140
CFPQNLPIYR EIQMCMGRIK TQILALIPT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976648.1	0.0	PREDICTED: protein ALWAYS EARLY 2 isoform X2
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	A0A061F434	0.0	A0A061F434_THECC; DIRP,Myb-like DNA-binding domain, putative isoform 2
STRING	EOY11452	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Thecc1EG026624t2
Entrez Gene	18600446

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]