PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG026383t1

Common Name

TCM_026383

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 661aa MW: 74541.6 Da PI: 6.5899

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026383t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.4	1.2e-15	126	188	2	69
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+++evlaL+++r+++e+++ + We+vs+k++e gf+rs+++Ckek+e+ ++++ i+ +++ Thecc1EG026383t1 126 WSNDEVLALLRIRSSIENWFPEF-----TWEHVSRKLAELGFKRSAEKCKEKFEEESRYFNSINCSKN 188 ******************998.....9*****************************99886655 PP
2	trihelix	96.4	2.6e-30	505	593	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r ++ ++ +k k+plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql Thecc1EG026383t1 505 RWPRDEVLALINLRCSLYNNGDHDKegaaIKAPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 593 8************9999999764444499***************************************8.9999******95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	19	122	179	IPR001005	SANT/Myb domain
Pfam	PF13837	8.4E-11	124	187	No hit	No description
PROSITE profile	PS50090	6.179	125	177	IPR017877	Myb-like domain
SMART	SM00717	0.22	502	568	IPR001005	SANT/Myb domain
Pfam	PF13837	3.8E-19	504	593	No hit	No description
CDD	cd12203	3.55E-24	504	573	No hit	No description
PROSITE profile	PS50090	6.539	505	566	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0001158	Molecular Function	enhancer sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence Send to blast
MFDGVPDQFH QFIASSAAAA AAAAVAAART TTLPLPLSFP PLHLANSSNG FTSFDTLYTS 60 NSHNQVPPQL QQQQPHFLHP LHPQHQTQKN EEKEENTGLV RMNMEIERER SMPESIDNHH 120 HHHHPWSNDE VLALLRIRSS IENWFPEFTW EHVSRKLAEL GFKRSAEKCK EKFEEESRYF 180 NSINCSKNYR LFSELEELCQ GENPPPPHHN QQVVGATEKN KNVEKSREDE DNMGQNLEDD 240 SRNIDEYQTT AGNNAPEDNE RVVENKADNK NSSNRKRKRQ KKFEMIKGFC EDIVNKLMNQ 300 QEEMHNKLLE DMVKRDEEKV AREEAWKKQE LDRINQELEL RAKEQAIAGD RQATIIKFLS 360 KFASTGSSKC FRRSNEALFK VPNDSNPPST SSSLVPAQNP NPIVNAQSQG DQVSSTTLST 420 MVLGHQNSGS CPTDNNQIKA TSMTENQAPE NPNPKTLTSS ALALAPKNPN PVNAQSNPSP 480 PTSSVTVNKA PLTPTSNDKE DLGKRWPRDE VLALINLRCS LYNNGDHDKE GAAIKAPLWE 540 RISQGMSELG YKRSAKRCKE KWENINKYFR KTKDVNKKRS LDSRTCPYFH QLSTLYNQGT 600 LIAPSEGLEN RPALPENHSA ALPESGNDNS SQRGPAKDST VHFSEGETNM VQVPAFEFEF 660 *

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence Send to blast

MFDGVPDQFH QFIASSAAAA AAAAVAAART TTLPLPLSFP PLHLANSSNG FTSFDTLYTS  60
NSHNQVPPQL QQQQPHFLHP LHPQHQTQKN EEKEENTGLV RMNMEIERER SMPESIDNHH  120
HHHHPWSNDE VLALLRIRSS IENWFPEFTW EHVSRKLAEL GFKRSAEKCK EKFEEESRYF  180
NSINCSKNYR LFSELEELCQ GENPPPPHHN QQVVGATEKN KNVEKSREDE DNMGQNLEDD  240
SRNIDEYQTT AGNNAPEDNE RVVENKADNK NSSNRKRKRQ KKFEMIKGFC EDIVNKLMNQ  300
QEEMHNKLLE DMVKRDEEKV AREEAWKKQE LDRINQELEL RAKEQAIAGD RQATIIKFLS  360
KFASTGSSKC FRRSNEALFK VPNDSNPPST SSSLVPAQNP NPIVNAQSQG DQVSSTTLST  420
MVLGHQNSGS CPTDNNQIKA TSMTENQAPE NPNPKTLTSS ALALAPKNPN PVNAQSNPSP  480
PTSSVTVNKA PLTPTSNDKE DLGKRWPRDE VLALINLRCS LYNNGDHDKE GAAIKAPLWE  540
RISQGMSELG YKRSAKRCKE KWENINKYFR KTKDVNKKRS LDSRTCPYFH QLSTLYNQGT  600
LIAPSEGLEN RPALPENHSA ALPESGNDNS SQRGPAKDST VHFSEGETNM VQVPAFEFEF  660
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	274	281	RKRKRQKK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00011	PBM	Transfer from AT5G28300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964202	2e-55	JX964202.1 Gossypium hirsutum clone NBRI_TRANS-471 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007030607.2	0.0	PREDICTED: trihelix transcription factor GTL2
TrEMBL	A0A061F9D3	0.0	A0A061F9D3_THECC; Duplicated homeodomain-like superfamily protein, putative
STRING	EOY11109	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8268	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	1e-102	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG026383t1
Entrez Gene	18600226

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]