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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG025913t1 | ||||||||
Common Name | TCM_025913 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 281aa MW: 31177.7 Da PI: 7.4092 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.4e-18 | 41 | 90 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d + ++ r +lg+f taeeAa+a+++a+ l+g Thecc1EG025913t1 41 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 90 799******.7*********32...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.9E-28 | 41 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-19 | 41 | 98 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.69E-32 | 41 | 97 | No hit | No description |
PROSITE profile | PS51032 | 19.585 | 41 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-13 | 41 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-35 | 41 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-8 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-8 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MEIQFQQQEQ QQQLHRKSSN IPVSKGGKFK GRNKNNGKVN KFVGVRQRPS GRWVAEIKDT 60 TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFITQ VSLDSPLASR IRNLLNSKKG 120 AKEQSVLVSA PTTTTSASTN PSPSSSTSSS SCNSSRGLSN DNSSPTGMVQ DTQLFEDAYK 180 PDMSHCARGF EFASSQSDFS HTSEPGFDRF LYTQEIMNFP KNVLLPEETG SELTEFQRMK 240 VERQISASLY AMNGVQEYLE TVHDSAEALW DLPPLCSLFC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 40 | 107 | 13 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs) (PubMed:17449807, PubMed:17827349). Binds to the GCC-box (NF-responsive box) of ENOD11 promoter. Acts as transcriptional activator of NF-responsive box-containing target gene promoters in root hairs (PubMed:17827349). Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation and maintenance, and nodule development. Necessary for NF-induced gene expression and spontaneous nodulation activated by CCAMK. Functions downstream of CCAMK to activate nodulation gene expression (PubMed:17449807). Involved in early stages of root nodule development. Functions redundantly with ERN2. Is essential with ERN2 for the initiation of root hair infection, and nodule organogenesis and development. Required for accurate expression of the NF signaling genes ENOD11 and ENOD12 (PubMed:23077241, PubMed:27208242). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349, ECO:0000269|PubMed:23077241, ECO:0000269|PubMed:27208242}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in roots from 1 to 21 day after inoculation with Sinorhizobium meliloti (PubMed:17449807). Induced by Nod factors in root hairs (PubMed:17827349). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007030077.2 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-11 | ||||
Swissprot | A2Q5W1 | 1e-113 | ERN1_MEDTR; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A061F7U7 | 0.0 | A0A061F7U7_THECC; AP2/ERF domain-containing transcription factor, putative | ||||
STRING | EOY10579 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16007 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 9e-23 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG025913t1 |
Entrez Gene | 18599855 |
Publications ? help Back to Top | |||
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